Candidatus Nitrosocosmicus oleophilus: NMY3_01928
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Entry
NMY3_01928 CDS
T04185
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
taa
Candidatus Nitrosocosmicus oleophilus
Pathway
taa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
taa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMY3_01928 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taa03021
]
NMY3_01928 (rpoB)
Enzymes [BR:
taa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMY3_01928 (rpoB)
Transcription machinery [BR:
taa03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
NMY3_01928 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
FtrD-like
FYVE
Motif
Other DBs
NCBI-ProteinID:
ALI36131
UniProt:
A0A654M0R6
LinkDB
All DBs
Position
1747491..1750853
Genome browser
AA seq
1120 aa
AA seq
DB search
MTVSISNNSIDMWPIINDILRREGVARQHLNSYNEFIERGLQSIIDEVNEIEIETAEYPY
KIKLGKIKMQQPRIMELDGSITHVAPVEARLRNLTYASPIMLECSIVEEGKTLESRFIHI
GDMPVMVKSNACMLHNYSESKLVDVGEDPKDPGGYFIINGSERVIVGLEDLSYNKIIVDI
EETSGTMLYKAKVYSSIVGYRAKLELIMRPDGSIVSKIPGSPVDIPLIILVRALGLESDK
DIANAVSLNDTIQDELEPSFEKSGEVATSRDAIIYISKRIAPGMLEEFQIKRAETLLDWG
LLPHLGKNPDNRYEKALFLGESACKLVELNLNWIEPDDKDHYGNKVIKFAGQMLADLFRT
AFRNLIRDMKYQLERSGQKRGINAVAAAVRPGIISDKLNNAIATGNWGRGRVGVTQLLDR
TNYMSTVSHLRRIQSPLSRSQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSAVI
SVSVLSSDVIEKLYELGVQNVNETNDDLKQKGARIFVDGRLIGYIEDGRNLSNRLRTMRR
SGRMHPHMGIYFYSSLNDNATKRLYISCNSGRVLRPLAIVKDGNILLTKEVIEKISKKFL
SWTDLLYMGIIELVDANEEENCYIASELRNITNDHTHVEIFLSSILGVGASIIPYPEHNQ
SPRNTYESAMAKQSLGFSTPLMNASTYVRQHFMLYPQMPVVSTKAINLLGLDERPTGQNC
VVAVLPFEGYNIEDAVVFSKSSVDRGLARTFFYRVYEAEAKQYPGGMKDTFEIPSSEANI
RGYRGEKSYRLLEQDGAIMHESVVNGGDILIGRTSPPRFMEEYKEFEVKGPYRRDTSIGV
RPSENGVVDTVIMTQSVEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVVGMLVNQEDLPY
TEDGVVPDVMINPHAFPSRMTVGMFMESLGGKAASLRGKIVDGSAFLGEKLNDIKDVMES
YGFKHSGKEVMYDGRTGKRFPVDVYVGVVYYQKLHHMVADKIHSRARGQVQMLTKQPTEG
RARGGGLRFGEMERDCLIAYGASMMLKDRLLEESDKAEINVCERCGLLSYFDTKQRKYVC
RVCGDKAKISSVIIAYAFKLLLQEMMSLNVAPRLLVKEKV
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcagtattagcaacaattctatagatatgtggcctataataaacgatatttta
agacgagagggagtcgcaagacaacatcttaattcttacaatgaattcattgaaaggggg
cttcaaagcataattgacgaagttaatgagatagaaatcgaaacggctgaatatccatat
aagattaagttgggaaaaattaaaatgcagcaacctagaatcatggagttagacggttcg
attacacacgtggctccagttgaagctaggctacgcaacttaacttatgcatctccgatt
atgttggaatgcagcatagttgaagagggcaaaacattggaatccagatttatacatatt
ggtgatatgccggtaatggtgaagtcaaacgcttgtatgcttcataattattctgaatca
aaattagtcgatgtaggggaagacccaaaggatcctggtggatatttcatcataaacggt
tcagaaagggtaatagttggattggaggatctttcgtataataagatcatcgttgatatc
gaggaaacatcaggtaccatgttatacaaggcaaaagtatattcttcgattgttggatat
cgtgcaaaactagagttgataatgaggcctgatggttccattgtttcaaagattccaggc
tctccagttgatatcccacttatcatattagtacgtgctttgggcttggagtctgataaa
gatattgcaaatgcagtttccttgaatgatactatccaagacgagctggaaccctctttt
gaaaaatctggcgaagttgcaaccagcagagatgccataatctacataagcaaaagaatc
gcaccaggcatgctagaggagtttcaaataaaacgagcggaaacattattggactgggga
ctattgcctcatcttggtaagaatcctgataaccgatacgaaaaggcattattcctaggc
gaatcagcatgcaagttggttgaattaaaccttaattggatagaaccagatgataaggat
cattatgggaataaagtcataaaattcgcaggtcagatgctagcagacttgttcaggacc
gcttttaggaatttaattagagacatgaagtatcaattagaaagatctggtcagaagcga
ggaatcaacgcagttgcagctgctgtcagacctggaattatctctgacaaattaaataat
gctatagctacaggaaattggggtagaggtagggtaggtgttacccaacttctggatcga
acaaattatatgtccacagttagccacttaagaagaatccagtcaccactaagccgaagc
caacccaattttgaggctagggatttacatgcaactcattttgggcgtatatgtccatcc
gaaactccagaaggttcaaattgtggtttggttaaaaacttggcactatctgcagtaata
tcagtcagcgtcttgtcttcagatgtaattgaaaagttatacgaattgggtgtccaaaat
gtaaacgagacaaatgatgatttaaaacagaaaggtgctaggatatttgtcgatggtcgg
ttaattggatacatagaggatggtcgtaatttatcaaataggttgcgcactatgaggcgt
tctggcagaatgcacccccacatgggaatctatttctattcttccttaaatgacaatgca
acaaaaaggttgtatatcagctgtaactcgggcagggttttgcgaccactagcaattgtg
aaagatgggaatatactactgacaaaggaagttatcgaaaaaatttcaaagaaattttta
tcatggactgatcttttatacatggggattatagaactggtagatgccaatgaggaagaa
aattgttatattgcaagtgaattaagaaacataacaaacgatcacactcatgttgagatt
tttttgtcttcgattttgggtgtaggtgcctctattattccatacccagaacataatcaa
tcacctagaaatacatacgagagtgcgatggcaaaacaaagtttggggttttcaactcca
ttaatgaatgcaagtacatatgtgagacaacatttcatgttatatccgcagatgcctgtt
gtaagtactaaagcaataaacttattgggattagatgaacggccaacaggtcaaaattgt
gtggtagcggttttgccatttgaagggtacaatattgaagatgctgtggtatttagtaaa
tcatctgtagatagagggttagcgcgtacttttttctaccgtgtttatgaggctgaagct
aaacaatatcctggtggaatgaaagatacttttgagatcccatcttctgaagccaacatt
cggggttatcgtggtgaaaaatcttatcgtttgttagaacaagatggtgcgataatgcat
gaatcagtagttaatggtggtgatattttgattggccgaacctctccacccagattcatg
gaggaatacaaagagtttgaagtaaagggtccatatcgacgcgatacatcaatcggtgtt
agaccatcggaaaacggtgtggtcgatactgttatcatgacgcagtcagtagaaggaggt
aagatgtataagattcgagtcagggatatgcgaattcctgagataggggataaatttgcc
tcgcgtcatggtcaaaaaggagttgttggaatgcttgtaaaccaagaggacttaccatat
acggaagatggcgtagtcccagatgtaatgatcaaccctcacgcttttccttctagaatg
actgttgggatgttcatggaatcattgggtggtaaagctgcttctttgagaggcaaaatt
gttgacggttctgcatttttgggagaaaagttgaatgatattaaggatgtaatggagtca
tacggattcaagcatagtggaaaggaagtaatgtatgacgggaggactggaaagagattc
cctgttgacgtatatgttggagtagtatattaccaaaaactacatcatatggtagccgat
aagatccatagcagggctagaggtcaagttcaaatgttaacaaagcaacccacagaaggt
agagcacgcggaggtgggttgaggtttggagaaatggaaagagactgtttaatcgcttat
ggcgcgtctatgatgctaaaggatagattgttagaagaatctgacaaggcagagataaac
gtgtgcgagagatgtggtttgctatcatattttgatacgaaacaaagaaaatatgtatgt
agggtctgcggtgacaaggcaaaaatttccagtgtcataattgcatatgcctttaaattg
ttattgcaagaaatgatgagtttaaatgtcgctccacgcttattggtaaaggagaaggtt
taa
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