Candidatus Nitrosocosmicus oleophilus: NMY3_01929
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Entry
NMY3_01929 CDS
T04185
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
taa
Candidatus Nitrosocosmicus oleophilus
Pathway
taa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
taa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMY3_01929 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taa03021
]
NMY3_01929 (rpoC)
Enzymes [BR:
taa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMY3_01929 (rpoC)
Transcription machinery [BR:
taa03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
NMY3_01929 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ALI36132
UniProt:
A0A654M9F0
LinkDB
All DBs
Position
1750888..1754682
Genome browser
AA seq
1264 aa
AA seq
DB search
MNDESVKILDGIRFSIWSPVEVRKFSVTEVTAPETYDEDGMPVQGGLMDNRLGTLEPGQK
CATCGNTSARCPGHFGHIELAEPVLHIAFIDDIHKLLLITCRSCNRIKLSNEDLEKYKNL
RDSKAAYAVITLENVKDEIIEKAKKVKVCPHCQKEQYDLIFTKPTIFVEKTDVGENRLLP
ITIRERLLNVSNDDLILLGYDPKTARPEWFILQVLPVPPVTVRPSIILETGIRSEDDLTH
KLVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHVTTYFDNEVSGIPQAHHRSGRPLKT
ITQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLTISDVGVPSDVAKKLTIPETVSTWN
IDKLKSLVLNGPNNYPGANYIIRPDGVKIRLDYVTDRAAIADSIMNGYTVERHLMNGDVV
IFNRQPSLHRMSIMAHNVRVLPYRTFRLHPAVCPPYNADFDGDEMNLHVPQSQEARAEAA
LLMRVQDQLISPRYGGPIIGGIRDFITGAFLLTKDETILTADEIANFAYLGGFSGPLPKP
HLEKDGKAFFTGKQLFSLFLPKDFNFVITSKWNKASKLQGKDVVIKNGQLISGVIDKASI
GAEEPDSVLHRIAKDYGNDEAKKFLDAILVMLKTYITHKGFSYGYSDLWLSDETRKEIQD
VIQKTYNKIDELIKQYHDGTLPLTRGLSPEEALELYVVNELSRARDRAGKIADRSFPDDN
SGVIMASTGARGSTLNIGQMTAALGQQSIRGKRIIKGYRNRALPHFRPGDQNPDSKGFVK
SNYRDGLNPIEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHLKIEYDLTVRDPHG
NIIQYVYGDDGIDPAKSDHGDAVNITRLVESESVIDEGVKTSESEVKDLLLKFKEKMNPK
LTQEIEAALLSYPLSKTGIKKVVHKIMDLFEKAMIEPGEAAGVVTAQSIGEPGTQMTLRT
FHFAGVKERNVTLGLPRLIELVDARKKPVTPTMDIYLDDEHKLSREKALEVAKRIIFTRI
SDLVNKVDTDYSGNLSFFFSEKKIADRGTSIQEIHEVLKSSKKRYEVTINEDILVIKVSL
SQEPDAQTLLTLRNKLLNARVKGVPDIERVTIVKQNDEWVIQTAGSNLAKVVLVEGIDVS
RITTNNVFEIWQTLGIEAARTALVKEVTNTLEEQGLEVDIRHIMLVADLMTSKGYLQQIG
RHGIAGTKTSVLARAAFEITVPTIARAALEGQVEPLKGVTENVIVGATVPVGTGMIDLYM
SVKE
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgaatctgtaaagatattagatggtattagatttagcatatggtcgcctgtc
gaggtaaggaagtttagtgttactgaggtgaccgcacccgaaacttacgatgaagatgga
atgcctgttcaagggggattaatggacaacagactgggaacgctggagcctggtcaaaaa
tgtgctacctgcggaaatacatctgctagatgtcctgggcattttggtcatattgaactt
gccgaacccgttctacacatcgcctttatcgatgatattcataaactgcttttgattact
tgcagatcgtgtaatcgtattaaacttagtaacgaagatttagaaaaatacaaaaattta
cgcgatagcaaggccgcttatgccgtaattactcttgaaaacgttaaagatgagataatt
gagaaagcaaagaaagttaaagtttgtccacattgccaaaaagaacaatatgatctcatt
tttacaaaacctacaatctttgttgaaaaaactgatgtaggggagaataggttattaccc
attaccattagggagaggctgttaaatgtttcaaatgatgacttgatactattaggatat
gacccaaagactgctcgaccagaatggttcattctccaagtattgcccgtaccaccagta
acagttagaccctctattattctagaaacaggtatccgatcagaggacgacttgactcac
aaactagtggatataatccgagtaaaccagagactcaaagagagcaaagaagctggaaca
ccacctttaattgttcaagatttggtagatttattacagtatcatgttacgacttacttt
gacaatgaagtttcgggcattcctcaggcccatcacaggtctggaagaccattaaaaacc
ataacccaaaggctaaagggtaaagagggtcgatttagaggatcactatcaggcaagcgc
gttgatttttcaagcagaaccgtaatttcgcctgatccaaatcttaccatatcagacgtg
ggtgtaccaagtgatgtcgcaaaaaagctcacaataccagaaactgtttctacatggaat
attgataaactgaaaagtcttgttctaaatgggcctaacaattatcccggagctaattac
attattcggccggacggagtaaaaataagattggactatgtcacggatagagctgctatt
gctgattcaataatgaatggctatactgtggagcgacacctgatgaatggggatgttgta
atatttaatcgacaaccatctttgcacaggatgtctattatggctcacaatgtaagagta
cttccatatcgtacttttaggcttcatccggcggtatgtccaccttataacgcagacttt
gatggtgacgagatgaatttacacgtaccacaaagccaggaggcaagggctgaggcggcc
ttgttaatgcgtgttcaggaccagttgatatcaccaagatatggaggacccattatcggt
ggtatacgtgatttcataactggagcattcttattaacaaaagatgaaaccatactaact
gctgatgaaatagctaattttgcatatttgggtggatttagtggacctttacctaagcct
catttagagaaagacggaaaggcattttttactggcaaacagttattttcacttttctta
ccaaaggatttcaactttgtaatcacttcaaaatggaataaagcttcaaagttgcaaggg
aaggatgtagtcattaaaaacggtcaattgatctcaggtgtaatcgataaagcttcaata
ggcgcagaagaacctgatagcgtacttcaccgaattgcaaaagactatggtaacgacgag
gcaaaaaaattccttgacgctatacttgttatgttaaagacctacattactcacaaggga
tttagttatgggtactctgatttgtggctgagtgacgaaactcgaaaagagattcaagat
gtaattcaaaaaacttacaataaaatcgacgaattgatcaaacaatatcatgatggtaca
ttacctttaaccagaggtttatccccagaggaggccttggagctatatgttgttaatgaa
ctctcaagagcaagagacagagccggaaaaattgccgaccgatcgtttcctgatgacaac
tctggcgtaatcatggcttcaaccggggcaagaggttcaactttaaatattggacagatg
actgcagctttgggtcaacaatcaatccgtggaaaaaggattatcaaagggtacaggaac
agagcgttaccacattttaggcccggtgaccaaaatccagattctaagggttttgttaaa
tccaattatagagatggacttaatccaatcgaatttttctttcatgccatgggaggaaga
gaaggtctagttgataccgcagttcgtactcaacaatcaggatatatgcagcgtagactc
ataaatgctttagaacatctcaaaattgaatatgatttaactgttcgtgacccacatgga
aatatcattcaatatgtttatggggatgatgggattgatccagccaaaagcgatcacggt
gatgccgtaaatatcactaggctggtagagagtgaatccgttattgatgaaggagttaaa
accagcgagtctgaagtgaaggatttgttgctaaaattcaaggagaagatgaatcctaag
ttgactcaggaaattgaagcagcattgttatcctatccactgagcaagactgggattaag
aaagtagtgcacaaaataatggatttgttcgaaaaagccatgatagagccaggagaagca
gcgggagttgttacagctcagtctattggtgaaccaggtacacagatgaccctgagaact
tttcattttgcaggagtaaaagaaagaaatgtaacgctaggcctaccaaggcttattgag
ctagtagatgcaagaaagaaacccgttactcctactatggatatttatcttgacgatgaa
cacaaattatccagggaaaaagccctggaagttgcaaaaaggattatttttacgcggata
tccgatctagtaaacaaagtggatactgattacagtggaaatttgtcatttttcttttct
gaaaagaagatagccgacagaggaacgtctatacaagaaatccatgaagtgttgaaaagt
tctaagaagagatacgaagttaccataaatgaagatattctagtcataaaagtttcccta
tcccaagaaccagatgctcaaactttactaacattacgtaataaattattgaacgcgcgt
gttaagggagtccctgatatcgaaagagtaacaattgtaaaacaaaatgatgaatgggtg
attcagacagctggatcaaatttggcgaaagtggtactagtagaaggaatagatgtatca
agaatcaccacaaacaatgtgttcgaaatatggcaaactcttgggattgaagccgcaaga
actgcactagtcaaagaagtcactaatactttggaggaacagggtttggaagttgatatc
cgacatattatgttagtagcagatttaatgacatcaaagggatacttacaacaaattggc
cgtcacggtatagcagggacaaagacttcagtattagcaagggcagcttttgaaattact
gtccctacaatcgctagagctgcactagaggggcaagtggaaccgttaaaaggagttact
gaaaatgtaatagtcggagcaactgtaccagttggcactggaatgattgatctatatatg
agtgtcaaggaatag
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