Candidatus Nitrosocosmicus oleophilus: NMY3_03226
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Entry
NMY3_03226 CDS
T04185
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
taa
Candidatus Nitrosocosmicus oleophilus
Brite
KEGG Orthology (KO) [BR:
taa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
taa03032
]
NMY3_03226 (topA)
03400 DNA repair and recombination proteins [BR:
taa03400
]
NMY3_03226 (topA)
Enzymes [BR:
taa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NMY3_03226 (topA)
DNA replication proteins [BR:
taa03032
]
Prokaryotic type
DNA Topoisomerases
NMY3_03226 (topA)
DNA repair and recombination proteins [BR:
taa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NMY3_03226 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Phage_zn_bind
Zn_ribbon_Top1
DUF4404
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
ALI37411
UniProt:
A0A654M4A8
LinkDB
All DBs
Position
2959408..2961660
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AA seq
750 aa
AA seq
DB search
MNGQDYIICHALGHLYGLSDNNKGSRKAFPVLDPTWLPLSILKKKGPSSKYLAFKIEKIL
REISQISKNASGFIHACDYDQEGEVIGYNILEHACHHKYSISKRAKFSSLTDEEIIQSFN
NLLPPNEKLKDAGTSRHMIDFIYGINLSRALTNSVNKKKESAGEIKKGYQQLSIGRVQGP
TLAFVVEREKEIENHIFEPYWNVIADFKKNNQIIKTYYYPQRIDTKPVAENIVNSCKNQL
GKVTNIKIIKTSIRPPIPFNLGDLQKEAYRLFRFTPSYTLSIAEKLYLAALISYPRTSSQ
KLPSPINYEKIIKAVSTLNNNLHQDSSYGNKTGSILSYSEISIKLLANKTLKPNEGKETD
PAHPAIYPTGQKPKQKLEDSELKLLDLIIRRFFSAFGKDASSSQSTVTITVKDKYTFKAE
EKKIVFEGWIQYYRPYFDLSGFVNLDSLSFLKPDDILENIKMELLEKFTQPPPRYNQSTL
LQKMEREKIGTKATRSEIIGTLFKRNYITNLVPPATTATNQSVTYDSKISKNYPISNNQK
VKTSKLEYTGVQKSGLRPTEIGIAIVSSMKKYIPNIVSTSLTQDMETQLEQIESGNSTSI
QVVEKARTQIKEAIQSFNINETKIGQEISLALEANRTTNPSRKPIALVALGTCPVCKNGN
LIVKKAIKSKKRFAGCTSYASTKCLATSPLPQKGTIKSTGKRCEKCNWPIIIASGNNQGK
KYQWEFCINSQCPLKIYSNSDKKNPPSQPT
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
ttgaatggtcaagattacatcatttgtcatgcattagggcacttatacggactatcagat
aataacaaaggatctagaaaagcattcccagtccttgatcccacttggttaccattatcc
atactaaaaaagaaggggccaagctcaaaatatctggctttcaagattgaaaaaatattg
agggaaatttctcaaatatctaaaaatgcctcaggctttattcatgcctgcgactatgac
caagaaggtgaagtgattggatataatatattagagcatgcttgtcaccacaaatactct
atttcaaagagagccaaattttcatcgcttacggatgaagaaataatacaatcttttaat
aatttgttacctcccaacgaaaagctaaaggatgcagggacgtcacgacatatgatagat
ttcatatatggaattaatctttctagggccctaactaattctgtcaataaaaaaaaagaa
tctgctggagaaatcaaaaaaggttatcagcaattatcaattggcagggtccagggtccc
acacttgcattcgtagtagaaagggaaaaagaaattgaaaatcacatatttgaaccctat
tggaatgttatagcagattttaaaaaaaacaatcaaatcatcaaaacttattattatccc
cagcgaatagatacaaaaccagttgccgagaacattgtcaactcttgcaaaaatcaactc
ggcaaagtaacaaatatcaagattattaaaacatcaataagaccaccaattccttttaat
cttggagaccttcaaaaagaagcctataggctttttagatttaccccaagttacaccctt
tcaatcgctgagaaattgtacttggctgcccttatttcatatccaagaacatcaagccaa
aagttaccttccccaattaactatgaaaaaataatcaaagcagtttcaaccctgaataat
aatttacatcaggatagttcatatggtaacaaaactggatcaatcctttcatattcagag
atctctataaaattgttagccaataagaccctcaaaccaaacgaaggaaaagaaactgat
cctgcgcatccggccatttatccgacaggccaaaaaccaaagcaaaaactcgaagattca
gaattaaaactattagatctcataatcaggagattcttttctgcgtttggaaaagatgcc
tcttctagtcaatctactgtcacgataacagtaaaagacaaatatacgtttaaagcagaa
gagaaaaaaattgtttttgaaggatggattcaatattataggccctactttgatttatca
ggctttgtaaatttagactcactttcatttctaaaaccagacgatattttagaaaatata
aaaatggaacttttagaaaagtttacccagcctcctcccagatacaatcaatcaacgttg
ttgcaaaaaatggaaagagaaaaaatagggaccaaagccaccaggtctgaaataattggt
actttgtttaagagaaattatattactaatcttgtaccccccgctactactgcaaccaat
caatccgttacctatgattcaaagatatcaaaaaattatcctatttccaataatcaaaag
gtaaagacaagcaagttagaatatacaggtgtccaaaaatcaggattaagacctacagaa
attggaatagctattgtaagttcaatgaagaaatacatacctaacattgtttcgacaagt
ctaacacaagacatggaaacccagttagaacaaattgaatcaggaaattccacaagtata
caagtggtagaaaaggcacgcacccaaattaaagaagcaatacagtcttttaatatcaac
gaaactaaaattggccaagaaatatctttagccttagaagcaaatagaacaacaaatcct
tcacgaaaacccatcgccctagttgcgttgggcacctgtcctgtttgcaagaatggaaat
ttaattgtcaaaaaggcgataaaatcaaagaaaagatttgcagggtgtacatcctatgca
tcaacaaaatgcttggctacatccccattacctcaaaaaggtacaataaaaagcactggg
aaaaggtgtgaaaaatgcaactggcccattatcatagctagtggcaataatcagggtaaa
aaataccaatgggagttttgtattaattctcaatgccccttgaaaatttacagcaatagc
gacaaaaaaaatcctccttcacaaccaacataa
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