KEGG   Candidatus Nitrosocosmicus oleophilus: NMY3_03287
Entry
NMY3_03287        CDS       T04185                                 
Name
(GenBank) Putative DNA ligase-like protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
taa  Candidatus Nitrosocosmicus oleophilus
Pathway
taa03030  DNA replication
taa03410  Base excision repair
taa03420  Nucleotide excision repair
taa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:taa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NMY3_03287
   03410 Base excision repair
    NMY3_03287
   03420 Nucleotide excision repair
    NMY3_03287
   03430 Mismatch repair
    NMY3_03287
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:taa03032]
    NMY3_03287
   03400 DNA repair and recombination proteins [BR:taa03400]
    NMY3_03287
Enzymes [BR:taa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NMY3_03287
    6.5.1.6  DNA ligase (ATP or NAD+)
     NMY3_03287
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NMY3_03287
DNA replication proteins [BR:taa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NMY3_03287
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NMY3_03287
DNA repair and recombination proteins [BR:taa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NMY3_03287
   NER (nucleotide excision repair)
    Other NER factors
     NMY3_03287
   MMR (mismatch excision repair)
    Other MMR factors
     NMY3_03287
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: ALI37471
UniProt: A0A654M4F1
LinkDB
Position
3023243..3024994
AA seq 583 aa
MNFLELAETFAMMEKTTSRLELTDHLVSILKKTPTDIIDKLVYLIQGKLGPDYESSDLGI
ADKLIIKSLSLVSGHSPAYIQNKYSDIGDLGEVAYNILTNKIQTTLIHQLLTIEYLFETL
LKIANTSGTGSLDVKLRFIVSLLNNSSNLEAKFIVKLILGNLRLGIANFTLLDAISLTFT
GEKKNRRILERAYNVSSDLGKIALILSKGSIEDIQSISISLFIPIRPMLAERVSNPSEAL
EKINGDALAEFKIDGERIQIHKKGKKIELFTRSLENVTSNFPDILSALDEIETKDLIAEG
EVVAIDPATKKYLPFQALMRRRRKYNIQQITLDYPVILNLFDLLYYNGLDKTHVPLSERR
RLLEEIFSTQKTGDKIILIDQIKVSRIDEIENYTEKALKNGCEGIMVKNPNSQYRAGARE
WAWMKLKKEYSGEVTDSVDLVIVGALHGKGRRVGKYGALLLATYDAERDVFCTICKVGTG
FTDNVLIDITDKLNMHVIKHKHSRVESGNTKMDTWFEPKIVLEILSPEITLSPVYTTAIN
RIKSGYGLALRFPKFTGKIREDKSAEDATTVKDIFEIYRSQLK
NT seq 1752 nt   +upstreamnt  +downstreamnt
gtgaattttctagaactagctgaaacctttgcaatgatggagaaaaccacgagtaggttg
gaacttactgatcatctagtatcaatattaaaaaaaacacctactgatataatcgataaa
ttagtttatttaattcaaggaaaactaggaccagattatgaatcgagtgatctgggaatt
gcggataaactaataatcaaatctctgtcacttgtaagtggtcattcacctgcctacatt
caaaataaatattctgatataggagatttgggagaagtcgcttacaatatcttaacgaac
aaaatacaaaccacattaattcatcaactactaactatcgaatacctattcgaaacatta
ctaaagattgccaatacatctgggacaggttctttggacgttaaactcaggttcatcgtg
agtttgttgaacaactcctccaatcttgaagccaaatttatagtcaaattgatcctggga
aatttgagactgggtatagctaactttactctacttgatgcaatatctctaaccttcacc
ggagagaagaaaaacagacgaattttagaaagggcctataacgtttctagtgatttagga
aagattgcattaatactatccaaagggtcaattgaggatatccagtcgatctcgatttct
ttatttattcccattcgaccaatgcttgctgaaagagtatcaaatccatcggaggctctg
gaaaaaattaatggcgatgcattggcagaatttaagatcgatggtgaaagaattcaaata
cataaaaaaggaaaaaagatagaactattcacaaggagcctagaaaatgtaacctcaaat
tttcctgatatcctatcggcgttggatgaaattgagaccaaggatttgatagctgagggc
gaagttgttgcaattgatcctgcgaccaaaaagtaccttccatttcaagccttaatgcga
agaagaaggaagtataatattcaacaaattaccttagattatccagtaatattgaatttg
tttgatttgttgtactataacggccttgacaagactcacgtacccttatccgaacgcaga
aggttacttgaagaaatatttagtacgcagaaaacgggtgataagataatcctgatagat
caaattaaagtttcaagaattgacgaaatagaaaactacaccgaaaaggcgctcaagaat
ggttgtgaaggaatcatggtaaagaatcccaatagtcagtatagggctggagccagagaa
tgggcttggatgaaactaaagaaagagtattctggagaagttacggattcggttgatcta
gtaatagtaggggcgttgcatggcaagggaaggagggttggaaaatatggagcattgctg
ttggctacatatgatgcagaaagagatgtcttctgtactatatgcaaagtaggaactgga
tttacagataatgttctcatagacataacagacaagcttaacatgcacgtaatcaaacat
aaacattccagagtggaatctggaaatacaaaaatggatacatggtttgaacccaaaatt
gttctagaaatactttctcctgaaataactttaagccctgtttatacaactgcaattaat
agaataaagtccgggtatggtctagcacttagatttccaaagtttaccggaaaaattagg
gaagacaaatcagcagaggatgctacaacagtcaaagacatttttgaaatatacagaagt
caactaaagtag

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