Tumebacillus algifaecis: CIG75_20270
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Entry
CIG75_20270 CDS
T04994
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tab
Tumebacillus algifaecis
Pathway
tab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIG75_20270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tab03400
]
CIG75_20270 (mfd)
Enzymes [BR:
tab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIG75_20270 (mfd)
DNA repair and recombination proteins [BR:
tab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CIG75_20270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_30
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASS77006
UniProt:
A0A223D6I0
LinkDB
All DBs
Position
complement(4473945..4477490)
Genome browser
AA seq
1181 aa
AA seq
DB search
MQSLVRILSSDGDFLRALQNRQDGIRDQLITGLTGSAQHLWLAGIRGSLARPLLIVTHSM
GRAQQVIEDLLELLPQEEIRLFPNREMGYADVLAYSPELASSRLSVLESLVRGEDSIIIA
PIAALHETLTSPHEFLKAARTLKVGDEIEIDELSRHLSYLGYERVEMVEAKGEFSVRGGI
VDLFPLTREDAVRIELFDVEVDSIRSFNPTDQRSLEKLDEVSVWPIREVIAPPERIQAAG
VELSKRLEAHLAKLQNAEVAEKLRENIGADLDRMEQGIWFPNLIRYFELIDPQPFNLLRY
VRQDTVFIYDEPGRLKETIKALEKEDLENLTTALEYGEMLPGLVADKKRNDMFTEKSHTK
LLFSLFTRAIPGLTPQAIINTNTRSMQNFHGQMNVLKSELERWAKLSYQVVFLAATEERA
ERLQRVLEDYKMQADILHEWDGTRQGPLILIGNLATGFELSLLRLAVITETEVFTNKKKT
RKMKTLSDAQKIKSYQDLKVGDYVVHVNHGIGKYMGISTKEILGIHKDYLQIKYKGKDEL
FVPVEQIDLVQKYIGQEEKEPKIYSLGGSEWQRVRSKVQSAVQDIAQDLIKLYAERQATP
GHPFVGDTTWQREFEAMFPYNETDDQLRCIKEIKKDMEMGRPMDRLLCGDVGYGKTEVAI
RAAFKAVMDGKQVAVLVPTTILAQQHYQTFKERCAGFPVNVELISRFRTKGQVSEVTKGI
KNGSVDIVIGTHRILSKTMEFKDLGLLIIDEEQRFGVSHKEKLKQLRTNVDALTLTATPI
PRTLHMSMIGVRDLSVIETPPENRFPVQTFVVEQQDGIVREAIERELGRGGQVYYLYNKV
NGIQEMANHLKQLVPDAKVLIGHGQMPEEELERTMLDFLQGDADVLVSTTIIETGLDVPN
VNTLIVHDADHLGLSQLYQLRGRVGRSNRIAYAYFTYQRNKVLTEVAEKRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIASVGFDLYSQMLSEAIEELKEDVEKVEKLPDP
TVELSVDAYIPGTYITDAMQKIEIYKKFVAARTLEEVRDLEEEVEDRFGDIPLEVRNLLA
VSRLKANAIRYGMTEIKQTPQGDVIIRLNEDQNKKIDGEKLFSLTREFPNRMKLTAQQQI
VITLKVKGLKEAEILQTLEKFMTCYNIVPKREQDTVDNMAL
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtgcaatcattagttcgaattttaagttcggatggcgattttctgcgcgctttgcagaat
cgtcaggacggcatccgcgaccaactgatcaccggccttaccggatcagctcagcatctc
tggcttgcagggattcggggctctttggcgcgtccgcttctgatcgtcacccacagcatg
gggcgggctcagcaggtgattgaagacttgctggaactgttgccgcaagaggagattcgt
ctttttcccaaccgggagatggggtatgcagatgtgctcgcctacagcccggagctggcg
tcttcgcgcctctcggtgctggagtcgttggtgcgcggagaggactcgatcatcatcgcc
ccgatcgccgcgctgcatgagactttgacctctccgcacgaatttttaaaagctgctcgg
acgctaaaagttggcgatgagatcgaaattgacgagctttcccgccacctttcctatctt
ggctatgaacgcgtggagatggtggaggccaaaggggaattttctgtccgtggcggcatt
gtcgatctgtttccgctgactcgcgaagatgcggtgcgcatcgaactgtttgacgtcgag
gtggactcgatccgcagtttcaacccgaccgaccagcgctcgttggagaagctggacgaa
gtgtcggtctggccgatccgagaagtgatcgcgccgcctgagcgcattcaagcggcagga
gttgaactgtccaagcgtttggaggcgcatttagccaaactgcaaaacgccgaggtggcc
gaaaagctccgcgaaaacataggcgccgacctcgatcggatggaacagggaatctggttt
cccaacttgatccgttactttgagctgatcgatccacagccgttcaacctgcttcgctat
gtgcggcaggatactgtgttcatctacgacgaaccggggcgcttgaaagagacgatcaaa
gcgttagaaaaagaggacttggagaacctgactaccgcgctggagtatggcgaaatgttg
cctgggctcgtcgcggacaaaaagcgcaacgacatgtttaccgaaaagtcgcacaccaag
ctgctgttctcgctgttcacccgcgccatccccggtttgactccgcaggcgatcatcaat
accaacacgcgctcgatgcaaaatttccacgggcagatgaacgtgctgaagtccgaattg
gaacggtgggcgaaactgtcgtaccaagtcgtctttttggcggcgaccgaggagcgggct
gaacggctacagcgcgtgctcgaagattacaagatgcaggccgatatcctgcatgaatgg
gacggcacgagacaaggtccgttgattttgatcggcaacttggctaccggttttgaactg
agtttgctgcgccttgctgtgatcaccgaaacggaagtctttacgaataaaaagaagacg
cgcaagatgaagacgctttcagatgcgcagaagatcaagtcctaccaagacctcaaagtg
ggggactatgtggtgcacgtcaaccacgggatcggcaaatatatggggatttccaccaag
gagatcctcggcattcacaaagactatctgcagatcaaatacaaaggcaaagacgagctg
ttcgtccccgtcgagcagatcgatctcgtccaaaaatacatcgggcaggaagaaaaggag
cccaagatatactcgctcggaggctccgaatggcagcgcgtcagaagtaaggtgcagtcg
gcggtgcaggacatcgcccaagatttgatcaaactgtatgccgaacgccaagcgacgcca
ggtcatccgtttgtcggtgatacgacgtggcagcgcgagtttgaagcgatgttcccttac
aacgagacggacgatcaactccgctgtatcaaagagatcaagaaggacatggagatgggc
cgtccgatggaccgtctgctctgcggagacgtgggctatgggaaaacggaagtggcgatc
cgcgcggccttcaaagcggtgatggacggcaaacaggtggcggtgctcgtcccgacgacc
attttggcacaacagcattaccagaccttcaaagagcgctgtgcaggctttccggtcaac
gtggaactgatctcccgtttccgcaccaaagggcaggtcagcgaggtaaccaaggggatc
aagaacggctcggtcgatattgtgatcgggacgcaccgcatcttgtccaaaacgatggag
tttaaagacctcgggctgttgatcatcgacgaggagcagcgctttggcgtgtcacacaaa
gaaaagctgaaacaactgcgcaccaacgtcgatgcattgacgctgacggcgactccgatc
ccgcgcacgttgcacatgtcgatgatcggggtgcgcgacctctccgtgatcgagacgccg
ccggagaaccgctttccggtgcagacttttgtcgtcgagcagcaggacggcatcgtgcga
gaagcgatcgaacgggaattgggacgcggcgggcaggtctactatctgtacaataaagta
aacgggattcaggagatggccaatcatctgaaacagctcgtccccgatgcaaaagtgctg
atcggacacggccagatgccggaggaggagctggagcggacgatgctcgatttcctacaa
ggggatgccgatgtactcgtatcgacgacgatcatcgagacgggccttgacgtgccgaac
gtgaacacgctgatcgtgcacgatgctgaccatctcggcctctcgcaactctaccagctg
cgcgggcgcgtcgggcgctccaacagaatcgcctacgcctatttcacctaccagcgcaat
aaagtgctgaccgaagtggccgagaagcgcctgcaggcgatcaaagagtttaccgagctc
ggttccggtttcaaaatcgcgatgcgcgacctgtcgatccgcggggcgggcaacctgctc
ggcgctcagcagcacggctttatcgcctcggtcggattcgacctctattcccagatgctc
tccgaagcgatcgaggagttaaaagaggatgtcgagaaggtcgaaaaactgcccgacccg
acggtggagctgtcggtcgatgcgtacattccgggcacgtatatcaccgatgcgatgcag
aagatcgaaatctacaagaaatttgtcgcggccaggacgctggaagaagtgcgcgatctg
gaggaagaagtggaagatcgcttcggcgatatcccgctcgaagtccgcaacctgctcgcc
gtctcgcgtctcaaagcgaacgcgattcgctacggcatgaccgagatcaagcagacgccg
cagggcgatgtgatcatccgcctgaacgaagaccagaacaaaaagatcgacggcgaaaaa
ctgttctcgctcacccgcgagttcccgaaccgcatgaaactgaccgcacaacagcagatc
gtgatcacgctcaaggtcaaaggacttaaagaagcggagatcctgcaaacgctggagaag
ttcatgacttgttacaacatcgtgcccaagagggagcaggacacggttgataacatggcg
ctctaa
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integrated database retrieval system
