Thalassomonas actiniarum: SG35_005090
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Entry
SG35_005090 CDS
T08826
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tact
Thalassomonas actiniarum
Brite
KEGG Orthology (KO) [BR:
tact00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tact03009
]
SG35_005090 (rlmD)
Enzymes [BR:
tact01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SG35_005090 (rlmD)
Ribosome biogenesis [BR:
tact03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SG35_005090 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Methyltransf_11
PCMT
MTS
Cons_hypoth95
RrnaAD
Ubie_methyltran
Methyltransf_12
Methyltransf_23
TRM5-TYW2_MTfase
CMAS
Methyltransf_15
UPF0020
DOT1
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
WDE00039
UniProt:
A0AAE9YTI1
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All DBs
Position
1153759..1155078
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AA seq
439 aa
AA seq
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MANFFKASTKKHTLGQKITVRIERLDLNGCGVGYYQKKPVFVAGALVGETARVRVVEQKS
KYLRGQLQGLENESKHRIAPFCRHYQKCGGCDLQHLAYQQQLNFKQDKVTQLFARNQINA
PLPWQLPLLAGERHYRRKARIGVQYAKDGSATIGFRQKATNDLVALDACPVLVEPVTDIF
ALLKPLLASLSVKQAIGHIEVLVTGHITLIVRQLKPLTDEDKALWLQAATAHHWQILLDN
GKDVLPLTRVEPLSYALSDGLTIGFTGKDFIQVNHDMNVQMVSQALDWLALDSGDKVLDL
FCGLGNFSLPVAARVLQLTGVEGVQSMVERAQKNARDNGLENCAFYQADLNSSWQDLPWA
QESFDKVLLDPARAGALEAIEQLLKFKIATLLYVSCDPATLARDSKVLLDAGYKIEKIAI
MDMFSQTKHVETMVLFSYP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatttttttaaagcaagcacaaaaaaacatactctggggcaaaaaataacggtg
cggatagagcgcctggatttaaatggctgcggggtggggtattatcaaaaaaaaccggtt
tttgttgccggcgccctggtaggagaaacggcccgggtacgggtggtcgagcaaaaaagt
aaatatctgcgcggacaattacaggggctggagaacgaaagtaagcacaggatagcgcct
ttttgccgccattatcaaaaatgcggcggctgtgatcttcagcatctggcctatcagcaa
cagcttaattttaaacaggataaagtcacgcagcttttcgcccgcaaccagattaacgcc
cctttaccctggcagctgccgttattggccggggaaagacattaccgccgaaaggcacgt
atcggggtgcaatatgccaaagacggcagtgccactatcggctttcgccaaaaagccacc
aacgacctggttgcccttgatgcctgtccagtgctggtggagccggttaccgatatcttt
gcgttattaaagcctttgctggcaagtttatcggtaaagcaggcgatagggcatatcgaa
gtattggttaccgggcatatcaccctgattgttcgccagttgaaacctttaacggatgaa
gataaggctttgtggctacaggcggcaacagcgcatcactggcaaattctgctggataac
ggcaaggacgtgctgcccctgacccgggtggagcccctcagttatgccttatcggacgga
ctcaccatcggctttaccggcaaggactttatccaggtcaatcacgatatgaatgtgcag
atggttagccaggcgctggactggttggcgctggactccggtgataaggtgttggattta
ttttgcggcctgggcaatttcagtctgccggtggcggcccgggtgctgcagctgacaggt
gttgaaggggtacagagcatggtagaacgggcacaaaaaaatgcccgggataacggcctg
gaaaattgtgctttttatcaggcagacttaaacagttcctggcaggatttgccctgggcg
caggaaagttttgataaagttctgctcgatccggcaagagccggcgcattagaggcaata
gagcagctgctgaagttcaaaatcgcgaccttgctttatgtcagctgcgatccggcaacg
ctggccagggatagtaaagttttattggacgccggctataaaattgaaaaaatcgccata
atggatatgttttcccagaccaagcatgttgaaactatggtattgtttagttacccatag
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