Thalassomonas actiniarum: SG35_008295
Help
Entry
SG35_008295 CDS
T08826
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tact
Thalassomonas actiniarum
Pathway
tact03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tact00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG35_008295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tact03019
]
SG35_008295
03009 Ribosome biogenesis [BR:
tact03009
]
SG35_008295
Enzymes [BR:
tact01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SG35_008295
Messenger RNA biogenesis [BR:
tact03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG35_008295
Ribosome biogenesis [BR:
tact03009
]
Prokaryotic type
rRNA helicases
SG35_008295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
NAT10_TcmA_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WDE00620
UniProt:
A0AAE9YUL7
LinkDB
All DBs
Position
1895808..1897595
Genome browser
AA seq
595 aa
AA seq
DB search
MTDTNNAAVGFESLGLPETLLTALNSLGFSSATDIQAQTIPPLLAGKDVLGEAQTGTGKT
AAFGLPALAQIDTSIKKPQLMVLAPTRELAMQVAEAIESFSKNMKGLRVATLYGGQSYGP
QFQQLERGAQVVVGTPGRLMDHLRRKSLKLDNLSFCVLDEADEMLNMGFLDDIEWILEHL
PEQTQMALFSATMPPQIRKVANRFLKEPEHIKIAAVKKAKANIKQYAWKVSGINKMTALE
RIAETVEYDAMIIFVRTRNDTVDVAEKLERLGYPAVALNGDMNQAQRERTVEQLKSGKSS
IMVATDVVARGLDIPRISLVVNYDLPGDNEAYVHRIGRTGRAGRSGVSISFVRPREMYSL
RHYERLTSGTIEQYELPTIQEIGKARIERTREELASVVADKELASMREIIESMANESELS
MVDLAAALLYQKQLKQPLQPKEDPKPRREARDRFDRNDRNGRRDARGGRDGRDNRGNRDN
RGERAPRKPKAVRSDVDWQTYRLEVGKEHGAKPGDIVGAIANEISLDSSYIGAINLHDRH
SYVQLPKGIPTGAFQQLKTVRVRRQALEISVSDAPAAHERPRRYNDRPERSRRAN
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgactgatactaacaatgccgctgtcggctttgaatctttaggcttgcctgaaacttta
ttaactgctttaaattctttaggattttcctctgcgaccgatatccaggcgcaaactatt
cccccgttattggcaggtaaagatgttttaggtgaagcgcaaaccggtaccggtaaaact
gcggcattcggtttacctgcattagcccaaattgatacttccatcaaaaagcctcagtta
atggtattggcaccgactcgtgaactggcaatgcaggtggcagaagccatcgaatcattt
tccaaaaacatgaaaggtttgcgtgttgctaccttatatggcggccagtcctatggtccg
caattccagcaacttgagcgtggcgcccaggtagttgttggtactccgggtcgtttaatg
gaccacttacgccgtaagagtttaaagctggataacctttctttttgtgtgcttgatgaa
gccgatgaaatgttgaacatgggcttcctggatgacatcgagtggatccttgagcacttg
cctgagcaaacgcaaatggccttgttctcggccactatgccgccgcaaatccgtaaggtg
gcgaaccgtttcttaaaagagcccgagcacattaaaattgctgcggtgaaaaaagccaaa
gccaatatcaagcaatacgcctggaaggtaagtggcatcaataaaatgaccgccttagag
cgtatcgccgaaacggtagaatacgatgccatgattatttttgtgcgcacccgtaacgat
accgtagatgttgccgaaaaattagagcgtctgggttacccggcggttgccttaaacggt
gatatgaatcaggcacaacgtgagcgtaccgtagaacagttaaaatccggtaagtcttct
atcatggttgctaccgacgtagttgcccgtggtctggatatcccgcgtatttctttggtg
gttaactacgacctgccgggtgataatgaagcttatgttcaccgcatcggtcgtaccggt
cgtgccggtcgcagcggtgtttccatttcatttgtacgtcctcgtgaaatgtactctttg
cgtcactatgagcgtttaacatccggtactattgagcagtatgaactgccgaccatccag
gaaatcggtaaagcccgtattgagcgtacccgtgaagaactggccagtgttgttgccgat
aaagaattggcgagcatgcgtgaaatcattgaaagcatggccaatgaatctgagctttcc
atggtagatttagccgcggcgctgttatatcagaagcagttaaaacagccgctgcagcca
aaagaagatcctaaacctcgccgtgaagcgcgtgaccgctttgaccgcaacgatcgcaat
ggtcgccgtgatgctcgtggtggtcgcgacgggcgtgataaccgtggtaaccgcgacaac
cgtggtgaaagagctccacgtaagcctaaggcggtacgcagcgatgtcgattggcagact
taccgtttagaggtaggtaaagagcatggcgctaagccgggtgatattgttggtgctatt
gccaacgaaatctcattggacagcagctatatcggcgccatcaacttacatgaccgtcac
agctatgtgcagttgccaaaaggcatccctaccggtgctttccagcagctgaaaacggta
cgtgtacgtcgtcaggctttagaaatctcggtatctgatgctcctgctgcacacgagcgt
ccgcgtcgctacaatgaccgtcctgagcgttcaagacgtgccaactaa
DBGET
integrated database retrieval system
