Trichoplax adhaerens (placozoan): TRIADDRAFT_21387
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Entry
TRIADDRAFT_21387 CDS
T01069
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tad
Trichoplax adhaerens (placozoan)
Pathway
tad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRIADDRAFT_21387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tad03019
]
TRIADDRAFT_21387
Enzymes [BR:
tad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRIADDRAFT_21387
Messenger RNA biogenesis [BR:
tad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
TRIADDRAFT_21387
mRNA degradation factors
3'-5' decay
Ski complex
TRIADDRAFT_21387
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
ResIII
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
6751234
NCBI-ProteinID:
XP_002109463
JGI:
21387
UniProt:
B3RPG2
LinkDB
All DBs
AA seq
937 aa
AA seq
DB search
ERWFFRVNINQDVDKFHSIVPNMAFTWPFELDAFQKQAIMKLEKHENVFVAAHTSAGKTV
VAEYAIALASKHVTKAIYTSPIKALSNQKFRDFKMTFGDVGLLTGDVQINPEASCLIMTT
EILRSMLYNGSDTIRDIEWVIFDEVHYINDDERGVVWEEVVILLPDHVGLILLSATVSNS
DELADWVGRTKRKQIHVISTTKRPVPLEHFLYRSPNQKTDKDLIKIFDIYYKLMGVIFRY
QSNSLREAFKRPTSTKPTPKGGKPTTKEAQIYQSLIKNLIKKDPPMVPAVVFVFSRKKCD
NLAGSLSTANLTTKDEKSKIKRFIKKSISILSDKDQKLPQVVWLCEMLQLGVAVHHSGIL
PVLKEIVEMVYQEGLVKCLFATETFAMGVNMPAKCVIFDTISKHDGNSRRRLHPGEYIQM
AGRAGRRGKDKTGTVIMLLKEEINEIDLRQMITGKPQKLQSKFRLTYGMALKVLRVENLE
VEDLMWRSFAELHKQVRKSTLEKQLLPLQTKSRSENFSCPNCISSIDLYCEVLHDYYHAN
ECLQKILLTEAQSKIKGRFVVINNDNHHNALGIVLDTKVDSKRRSFYKTFILINESEEKS
TLLKPKGSRPYSNQLFIPYGTCQYKVEDIGESDIAAISKNSSKVKVDKIMVELTGSNFKN
IDSEEHISAAMLELKRVSENNSDGLQTVLSFSDIKRFDAEFRDIKAVYDDAIARMKSSKC
VKCPHFAEHLVQARDRFVSRQRLERVKFELSKENLVLQADYKNRRELLQCLGYIDERGVV
QLKGRVACEINNCELLITELVFDNILNPMAPEEIAALLSCIVFQQGVEVIRGKAKELDKL
EAEYNIDIYEKYEDMINFGLVEVVHDWAKGEPFAKIMTLTDVSEGVIVRCIQRLDSACME
VKTAARIIGDPVLFDKMIEASRMIKRDICFTASLYIK
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
gaacgatggtttttccgcgtcaacataaatcaggatgtcgataaatttcattctatagta
ccaaatatggcatttacgtggccgtttgaattagatgcattccagaagcaggctattatg
aaactagaaaagcatgaaaatgtgtttgttgcagcgcacacttcagctgggaagactgta
gttgccgaatatgcaattgctttagcatcgaagcatgttacgaaggccatatatacttct
cctataaaggctctgtcaaatcagaagtttcgcgatttcaaaatgacgtttggtgatgta
ggactattgacgggtgatgtacaaataaatcccgaagcatcttgtttaatcatgacaaca
gaaattcttcgttccatgctatacaatggttcagacactattcgcgatatagaatgggtt
atcttcgacgaagtgcattatattaacgacgatgagaggggagtcgtttgggaagaagta
gtcatattgttgcctgatcatgttggtctgatattattatctgcaacggtctcaaattcg
gatgagttagcagactgggttgggagaactaaaagaaaacaaatacatgttatcagtaca
actaaacgccctgttccccttgaacattttctatatcgttcaccaaatcaaaagacagat
aaagatttgatcaaaatctttgacatatattataaacttatgggtgtaatcttccgttat
caatccaatagcctgagagaagcttttaaacggccaacatctactaaacctacaccaaaa
ggaggtaaacctacgaccaaagaagcgcaaatataccagtcattaattaaaaatttaata
aaaaaagatcctcctatggttccagccgttgtttttgtgttctcgaggaagaaatgtgac
aatttggccggtagcttatcaactgctaatcttactactaaagatgaaaaatcaaaaata
aaacgtttcatcaagaagtcaatttcaatactaagcgataaagaccagaaacttcctcag
gtagtttggctctgtgagatgctccagctaggagtagctgtacaccatagtggaattctc
cctgtgttaaaggagatagtagaaatggtatatcaggaaggcctcgtaaagtgcctattt
gcgacggaaacttttgctatgggggtcaatatgcccgctaagtgcgttatatttgacaca
atatctaagcatgacggcaatagtcgtcgacgcctgcatcctggtgaatatattcaaatg
gcaggaagagcaggccgaagaggcaaagataaaaccggaacagttatcatgttattaaag
gaagaaataaatgagattgaccttcggcaaatgataactggaaaaccgcaaaaattgcag
tctaaatttagattaacttatggtatggcactaaaagtattacgagtagagaatctagaa
gtagaggatttaatgtggcgtagttttgcggaattgcacaaacaagtcagaaaatcgaca
ctagaaaaacagttgttgccgttacaaactaaatcaagatcggaaaactttagctgtcct
aattgtattagcagtatcgatttatattgcgaagtgttacatgactattatcatgctaat
gaatgcttacaaaaaatcttattaactgaagcacaatcgaagattaaaggaagattcgtt
gtaataaataatgataatcaccacaacgcgttgggcattgttttagatactaaagtggac
tcgaaacgaagatctttttacaagacattcattctaatcaatgaatctgaagaaaaatca
actctactgaaaccgaaagggagtagaccttactctaaccaattattcataccatacggc
acgtgtcaatataaagttgaagatattggcgaatctgatatcgctgcgatatctaaaaat
tcctctaaagttaaagttgataaaattatggttgaacttactgggtcgaacttcaagaac
attgacagcgaagagcacattagtgcagcaatgctggaattaaaaagagtatccgaaaat
aattcagacggattgcaaactgtactctcgtttagtgatatcaaaagatttgatgctgaa
tttagagatattaaagcagtctatgacgatgctatagctagaatgaagtcttcgaaatgt
gtgaaatgccctcattttgccgaacatcttgtccaggctcgagaccgatttgtaagtcgt
caaagactcgaaagggtaaaattcgagttatcaaaagaaaatttagtattgcaagccgat
tataaaaatcgtagagagctgttacaatgcttagggtacattgatgaaaggggtgttgtg
caattaaaaggacgagtggcttgtgaaattaataattgtgaattgcttattacggagtta
gttttcgataatatcttaaatcctatggcaccagaagagattgcagctttgctgtcatgt
attgtatttcaacagggagtggaagtcattagaggaaaagcaaaagaattggataaactc
gaagccgaatataacatagatatttatgaaaagtatgaagacatgattaatttcggtctt
gtagaagtagtgcatgactgggctaaaggagagccattcgcgaaaatcatgaccttaacg
gatgtatcagaaggtgtcatagtgcgatgtatacaacgcttagactcagcatgtatggag
gtaaaaacagctgcaagaattattggcgatcctgttttattcgataaaatgattgaagct
tcaagaatgattaaacgggatatttgttttacagctagtttatacatcaaataa
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