Trichoplax adhaerens (placozoan): TRIADDRAFT_26233
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Entry
TRIADDRAFT_26233 CDS
T01069
Name
(RefSeq) hypothetical protein
KO
K15542
polyadenylation factor subunit 2
Organism
tad
Trichoplax adhaerens (placozoan)
Pathway
tad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRIADDRAFT_26233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tad03019
]
TRIADDRAFT_26233
Messenger RNA biogenesis [BR:
tad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TRIADDRAFT_26233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EML
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_TEP1_C
eIF2A
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_WDR11_2nd
CFAP43_N
Motif
Other DBs
NCBI-GeneID:
6754547
NCBI-ProteinID:
XP_002113696
JGI:
26233
UniProt:
B3RZA6
LinkDB
All DBs
AA seq
431 aa
AA seq
DB search
MANSNQGPVQGQNAQQPTLYRQRFYTRPMAQSALVFDGKRMRKAVQRRTIDYNASVIRQL
ESRVWQSDYRDQPVIQPDPLYFNSLLPPSSMKQNPMNAVTTKFVRTSTNKQRCPIFCVVW
TPEGRRLITGASSGEFTLWNGLTFNFETILQAHDTSVRSMIWSHNDTWLLTTDTGGYIKY
WQSNMNNVQMFEGHKEAIREASFCPTDIKFTTCSDDGTVKIWDFLRCEEEVTLRGHGADV
KCVDWHPQKAMIASGSKDSQQPIKLWDPRIGSSISTLHLHKSTVMEVKWNKNGNWLLTAS
RDHLLKIFDIRAMKELQTFRGHKKEATAVAWHPVHEGLFASGGSDGAMYFWIAGCDKEVG
GIEQAHEGMIWSLAWHPLGHILCSGSNDHSSKFWTRNRPGDKMRDKYNMGALGSSNILDE
NDQAGKLLCPC
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggccaatagcaaccaaggcccagtacaaggtcaaaatgctcaacaaccaacattatat
cgacaacgtttttataccaggccaatggctcaaagtgctttggtctttgatggtaaaaga
atgcgaaaagccgtccaaagaagaaccattgattacaatgcatcagttattcgacaatta
gagagtcgcgtatggcaaagtgattaccgtgatcagcctgttatacagccggatccttta
tattttaatagtcttttgccaccgtctagtatgaagcagaatcctatgaacgctgtaact
acaaaatttgttagaacctcgacaaataagcaaagatgccccatcttttgtgtagtgtgg
acgccggaaggacgacgattaataactggcgcatccagtggcgaattcacattatggaat
ggactaacattcaatttcgagactattctacaagcacacgatacatctgttcgctctatg
atctggagtcataatgacacttggttgttaacaactgataccggaggctacataaagtat
tggcaatctaatatgaataatgtacaaatgtttgaaggtcataaggaagcaattagagag
gcttcgttttgtccaaccgatattaagtttaccacgtgttcagatgacggtactgtcaaa
atttgggattttcttcgatgtgaagaggaagttactcttcgagggcacggagccgatgtc
aaatgtgttgactggcatccacaaaaggctatgattgcttccggtagtaaagatagccag
caacctatcaaactatgggatcctagaattggaagtagtatctcgacgttacatctacat
aaaagcacggtcatggaagtcaaatggaataaaaacggaaactggttgttaactgcttca
agagatcatttgctaaaaatatttgatattagagcaatgaaagagttgcaaacttttaga
ggtcataaaaaagaagccacagccgttgcatggcatcctgttcatgaaggactatttgca
agcggtggttcagatggtgctatgtatttttggatagctggttgcgataaagaagttggt
ggaattgaacaagcgcatgaaggcatgatttggagtctcgcttggcatcctttgggtcat
attctttgttctggttctaacgatcattccagtaaattctggactagaaatagacctggg
gataaaatgagagataaatacaacatgggtgcactaggtagtagtaacattttagatgaa
aacgatcaagctggtaagctgttatgtccttgttga
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