Trichoplax adhaerens (placozoan): TRIADDRAFT_54641 Help Entry TRIADDRAFT_54641  CDS       T01069                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism tad  Trichoplax adhaerens (placozoan) Pathway tad03013   Nucleocytoplasmic transport tad03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:tad00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     TRIADDRAFT_54641    03015 mRNA surveillance pathway     TRIADDRAFT_54641  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:tad03019]     TRIADDRAFT_54641 Enzymes [BR:tad01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      TRIADDRAFT_54641     5.6.2.5  RNA 5'-3' helicase      TRIADDRAFT_54641 Messenger RNA biogenesis [BR:tad03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      TRIADDRAFT_54641    mRNA cycle factors     Common to processing body (P body) and stress granule      TRIADDRAFT_54641 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 AAA_30 UPF1_1B_dom AAA_19 UvrD-helicase ResIII NPHP3_N nSTAND3 SLFN-g3_helicase AAA_22 PhoH ANCHR-like_BBOX AAA_25 AAA_16 AAA_18 DEAD Motif Other DBs NCBI-GeneID:  6752288 NCBI-ProteinID:  XP_002110528 JGI:  54641 UniProt:  B3RSL3 LinkDB All DBs AA seq 1070 aa AA seqDB search MAMSNADAYGPSTANTLTFYDPESSDFGGDTQASDYDFKDFTIPSQTQSQSQSDPVVPYL DGNNKSFTNSTIGNRNIHSAVAASDNLLTNVTDKMVDLNFEDDEDEEDGFYKKERLLHAC SYCGIHDPAAVVMCNTCKRWFCNGRGTTSGSHIINHLVRAKHREVTLHKDGPLGETVLEC YNCACRNIFVLGYIPAKSDSVVVLLCRHPCATLTKSKDDDWDQSQWQSLIDEKCFRKWLV KVPSDQEQMRAKQITAQQINRLEDLWREHPEATLEDLDKPELTEEVHPVLLRYEDAYIYK SIFEPLIIMESDYDKQLKQNLAQKNVKVRWDQRLNKKRLAYFSLPDLQDDNDEVGLELKS NFDVPESCKEPFEVEFVWKATSFDRMRAAVHKFAIDKTSMNGYLYHRLLGHLVEERPISC KLPKRIAVSGLPELNDSQRTAIKNVLQKPLSLIQGPPGTGKTVTSAALVYHLVNINRWYE SYDRLYPNIKPELIHLRVIRLCARSRETLDSSVSMLSLHNQILRMETPEGMKLRKLQQLR EEQGELSSSDDALYRQLRNTCEKELLQHADVICCTCVGAGDRRLTGFTFRVILIDEATQA TEPECMIPIVRGAKQCILVGDHCQLGPVVMCKKAAGAGLAQSLFARLVALGVRPIRLTVQ YRMHPDLSEFPSFHFYEGALQNGVAIDRKGLPTITASGNNSKEVQQDQANVTLSDSESSP ESLIVDRNRPMFFWNTQGTEEPGATGSSYLNRSEAESVEKIITCFLRTGIKPEQIGVITP YESQRAYVVTLMKTRGSMQDDLYQKVEVASVDAFQGREKDYIILSCVRSNEYQGIGFLND PRRLNVSITRAKNGLIIIGNARVLAKHPLWYNLIDYMKDKHCFMEGSLNNLRECNMRLPV PRKKASKVQSSYGLLPGNYTLSDLQEVPIQSSVYRNINYPDDLYRGHDLMSYIGGGGFGN DARIPLPRNIILPMPPPVLHFNQQFGGGGQAGHRDKSQQDFSQNMTMSQDATQPFSLGLL TQDPALTNQGMHTLSQSGGLSQDSYLNEDFKMHSGMSQELNFSYRDMKRN NT seq 3213 nt NT seq  +upstreamnt  +downstreamnt atggcgatgtccaatgctgatgcttacggcccatcgacggccaatactttaactttttat gatcctgaaagcagtgattttggcggagatactcaagctagcgattatgatttcaaagat tttacaattccatcacaaacgcaatcacaatcgcaatcggatccggtcgttccctacctc gatggcaataataaatcttttacaaattcgactattggaaatcgcaatatccattctgcg gtggctgccagcgataacttgttgactaatgtcacggataaaatggtcgatttaaatttt gaagatgatgaagatgaagaggacggattctataagaaggaacgtttattacatgcatgc agttactgtggcattcatgatcctgcagctgtcgttatgtgcaatacatgcaaaagatgg ttttgcaatggccgtggtactacatcaggaagtcatatcattaaccatttggtgagagcg aagcacagagaagtaacacttcataaagatggacctctcggagagacagtactagaatgt tacaattgtgcttgtagaaatatctttgtactaggttacataccagccaaatctgattct gttgttgtgttactttgccgacatccttgtgcaacattgacaaaatcgaaagatgatgac tgggatcaaagtcagtggcagtcattaattgatgaaaagtgcttccgcaaatggcttgtt aaggtacctagtgaccaagaacaaatgagagccaagcagattactgcgcaacaaatcaat aggctagaagatttgtggagggaacatcctgaagctacgttagaagatctagataaaccg gaactaacagaagaagtccatccagttttattaagatatgaagacgcttatatctacaag tccatatttgaaccattaattataatggaatctgattacgataagcaattgaaacaaaat ttggcccaaaaaaatgtaaaagttcgctgggatcaacgtctaaacaagaaaagacttgct tatttcagccttcctgatcttcaagatgataacgacgaagtaggtttagaattaaaatca aattttgatgtcccggaaagttgtaaagaaccttttgaagtagaatttgtatggaaagcc acctcatttgatagaatgcgagctgctgttcataaatttgccatagataagacctctatg aatggatacttataccaccgattattagggcatttagtggaggaaagaccaataagttgt aaacttccgaaacgtattgctgtttctggtttaccagaactaaatgattctcaaaggaca gcaattaagaatgtattacaaaagccgttaagcttgatccagggaccgccgggaactggt aagacggtgacatctgctgctttagtttatcatttggtaaacataaaccgatggtacgaa agttatgatagactttatccaaatattaaacctgaattaatacatttaagggtaattcga ctttgtgctagaagtagagaaactttagattcttcggtttcaatgctatcgttacataat cagatccttcgaatggaaactccggaaggaatgaaattacgtaagctacaacaattaaga gaagagcaaggggaattgtctagtagcgatgatgccctatatcgtcagttaaggaataca tgtgaaaaagaattgttacagcacgcggatgttatttgctgtacttgtgttggtgctggc gacaggcgcttaaccggatttactttccgtgtgattctcatcgatgaagccacacaagct acggaaccggagtgcatgatacctatagttagaggagctaaacagtgcattttagttggc gatcattgtcagcttggaccggttgtaatgtgtaagaaagctgcaggtgctggattagct caatcgttatttgcacgacttgttgctcttggtgtacgccctatacgattaactgtccaa tatcgaatgcatcctgatctcagtgaatttccgtcgttccacttttatgaaggagcgttg caaaatggtgttgcaatagatagaaaaggcttaccaacgattactgcttcgggaaataat tcgaaagaggttcagcaagaccaagcgaatgttactctttcagattcggaatcctcgccc gaatctttgatagtggatcgaaataggccaatgttcttttggaatacgcaaggaacggaa gaaccgggcgcaactggctcttcttatttaaataggagcgaagcggaaagtgtggaaaaa attattacgtgtttcctacgaacaggtataaaacctgaacagataggtgttattacacct tatgagagccaaagagcttacgtagtaactctaatgaaaactcgtggatctatgcaggat gatttgtaccaaaaagtagaagtagcaagcgtagatgcttttcagggtcgggaaaaagat tatattatattgtcttgtgttaggagtaacgaatatcagggcatagggtttttaaatgat ccgcggcgattgaacgtatcaattacacgagcaaaaaatggacttatcatcattggaaat gctcgtgttctagctaagcatcctctatggtataacttaattgattacatgaaagacaaa cattgctttatggaagggtcattaaacaatctacgggaatgcaatatgagattgccagta cctcgtaagaaagcgagcaaagtacaatctagctacggtttattgcctggcaattacact ctatctgatttacaggaagtaccaattcaatcttcggtttacagaaacataaattacccg gacgatttatatagaggtcacgatctaatgtcttatattggagggggtggtttcggtaat gacgcaagaatacccttaccaagaaatatcatacttcctatgccaccaccggttctccac tttaatcagcaatttggcggtggtggtcaagccggccatagagataaatcacagcaagat ttttcacaaaatatgacaatgagccaagatgccactcaaccattctcgttaggtcttctt actcaagatccagcactaacaaaccagggaatgcataccctttctcaatctggtggctta tctcaggatagctatttgaatgaagactttaagatgcattctggcatgtcgcaagagcta aacttttcctatcgagacatgaagagaaattaa

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