Trichoplax adhaerens (placozoan): TRIADDRAFT_54844
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Entry
TRIADDRAFT_54844 CDS
T01069
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tad
Trichoplax adhaerens (placozoan)
Pathway
tad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRIADDRAFT_54844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tad03019
]
TRIADDRAFT_54844
Enzymes [BR:
tad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
TRIADDRAFT_54844
Messenger RNA biogenesis [BR:
tad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
TRIADDRAFT_54844
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
RsgA_GTPase
AAA_22
ATP_bind_1
AAA_29
MMR_HSR1
AAA_16
Motif
Other DBs
NCBI-GeneID:
6752374
NCBI-ProteinID:
XP_002110634
JGI:
54844
UniProt:
B3RT55
LinkDB
All DBs
AA seq
448 aa
AA seq
DB search
MASTGVDVTRSNEDEDGLVEQRIKARAVASLPGKEYKLEAETELRIEVRSVSDAKVILLQ
GKAEIFGCELVSDKVVDMRKRTTCAVFTWHGCTIKIIPESVYAYVSDKTPMQFYVNLHEA
LEQRRCKAVENNTDGPVTMVIGPTDVGKSTLCRLLLNYAVRLGRLPTFIDLDVGQGIVSI
PGTIGALHINRTITVSDGLDDYPSLVFHYGSNTPSTNVKLYMTLVSRLADSLRKYWANLP
SRCHNGCIINTCGWITDVGYKIIVDAAETFKVDQIIVLDNERLYNDLMIHFGSNAEIVLA
PKSGGVIERAQSTRANARALRIKTYFYGDDNSGYTPHVYELAFSDIQIFKVGGPNLPTSC
LPLGMKPEDAALKLINVVPEKSLIHRILAVSAALSTDEDIVQTAVIGFVCVYDVDVNRKI
LKVLSPSPGALPRHILILSDLSFYDIPS
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaccggtgtcgatgttactcgttctaatgaagatgaggatggtcttgttgaa
cagcggatcaaagctcgagctgtagcaagtctacctgggaaagagtataaattggaagct
gagacagagttaagaattgaagttcgaagtgttagcgatgctaaagttattcttctgcaa
ggaaaagcagaaatatttggttgtgaattggtcagcgataaagttgtggatatgaggaaa
cggactacatgtgcagtattcacttggcatggctgtactattaaaattattcctgaatct
gtttatgcgtacgtttcggataagactcctatgcaattctatgttaatttacatgaagca
ttggaacaacgtcgatgcaaggcagtcgagaacaatactgatggaccagtgactatggtc
attggtcctactgacgtaggaaagtcaactctatgtcgtttactacttaattacgccgtt
cgattgggacgattaccgacattcatagatttagacgttggacagggtattgtttcaatt
cctggcacgattggtgcgttacatatcaataggaccattaccgtatcagatgggctggat
gattacccatcattagttttccattatggtagtaataccccttcaactaatgtaaagtta
tacatgacgttggtatcacgacttgcagattctttgcgaaaatattgggctaatttacct
tcaaggtgccacaacggctgtataattaatacatgtggctggataaccgatgttggatat
aagataattgtggatgcagccgaaacatttaaagtcgatcaaattatcgttctggacaat
gaacgtttatataacgatttaatgattcactttggtagcaatgcggaaattgtcttagcc
ccaaaatctggcggagttatagaaagggcgcaaagtacacgtgctaatgctcgtgcttta
cgcataaagacgtatttttacggtgatgataatagcggatatactccgcatgtttacgag
cttgccttttcagatatacaaatttttaaagttggaggcccaaatcttccgacatcatgc
ctgcctctaggaatgaaacctgaagatgcagcactgaaattaatcaatgtagttcctgag
aaatcattaatacatagaattttagctgttagtgcggctttgtcaacggatgaagatatt
gttcagactgccgtaattggctttgtttgtgtgtacgatgtcgatgttaatagaaagata
ttaaaggttttgtcaccttctcctggtgctcttcctcgtcatattttaattcttagcgat
ctcagcttttacgatataccttcttga
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