Trichoplax adhaerens (placozoan): TRIADDRAFT_58512
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Entry
TRIADDRAFT_58512 CDS
T01069
Name
(RefSeq) DNA directed RNA polymerase II polypeptide B
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tad
Trichoplax adhaerens (placozoan)
Pathway
tad03020
RNA polymerase
tad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TRIADDRAFT_58512
09124 Replication and repair
03420 Nucleotide excision repair
TRIADDRAFT_58512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tad03021
]
TRIADDRAFT_58512
03400 DNA repair and recombination proteins [BR:
tad03400
]
TRIADDRAFT_58512
Enzymes [BR:
tad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TRIADDRAFT_58512
Transcription machinery [BR:
tad03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TRIADDRAFT_58512
DNA repair and recombination proteins [BR:
tad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TRIADDRAFT_58512
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
6755773
NCBI-ProteinID:
XP_002114728
JGI:
58512
UniProt:
B3S2W9
LinkDB
All DBs
AA seq
1196 aa
AA seq
DB search
MDDVDSYDLTDQPIDDDEIETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRI
VEDSPQIDIQGETQHHSSEEQQSVRYQLKFDQIYLSKPTFWEKDGSPTPMMSNQARLRNL
TYSAPLYVDITKTITKGNNEPEVKCHPKTFIGKIPIMLRSTYCLLHNMADHALTELNECP
LDVGGYFIINGSEKVLIAQEKMASNTVYVFQKKESKYAYVAEIRSVTENSSRPTSTLWVS
MLARGGGTSKKSVIGQKIVAAIPYVNQEIPIMVVFRALGFVADRDILEHIIYDFDDPELM
EMVKPSLDEAFVIQEQNVALNYIGSRGSRSGVTKEKRIKYAREILQKEMLPHVGISDYCE
TKKAYFLGYMVHRLLLTALGRREVDDRDHYGNKRLFRNLLKEVKMYAQKFVDNGRDFNLE
LAIKTKIITDGLRYSLATGNWGDQKKAHQSRAGVSQVLNRLTFVSTLSHLRRLNSPIGRD
GKLARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN
LEEVSHSALASATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDVIVSEVSMVRDIRDREI
RIYTDAGRICRPLLIVENQKLVLKKNHIESMKTADDYEVFGWQDLIANGIVEYVDTLEEE
TVMIAMTPDYLTAGVNYCRTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA
MGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINTIVAIASYTGYNQED
SIIMNRGAIDRGLFRSVFYRSYRDQESSGDFNSEEIFEKPSKETCSGMHNAMYDKLDDDG
LVAPGTRVSGGDIVIGKTALLPEDADALGDTNKRFVKRDASTGLRSSESGIVDQVLLTVS
QEGYKFTKVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGITPDIIINPHAI
PSRMTIGHLIECLQGKVSANKGEIGDATPFNDTLTVQKISSLLSDYGYHLRGNEVLYNGF
TGRKLNTQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMQGRARDGGLRFGEMERD
CQISHGAAQFLRERLYDASDPYIVHMCNLCGLVAVANLRNDTYECKGCRNKTRISQVRIP
YACKLLFQELMSMSLAPRIMSRCRSDISSGKLITTNQGKTCYRRNHAVVHKPTIKF
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgttgacagttacgatctaaccgatcagccgatcgatgatgatgaaattgag
acagatctatggcaagaagcctgttgggtggttatcaatgcttattttaatgaaaaaggt
ttagtccgtcagcagttagactctttcgatgaatttatccagatgtcagtgcaaaggatt
gtggaagattcaccacagatcgatatacaaggagagacccaacatcattcttcggaggaa
caacaatcggttcgatatcagctgaaatttgatcagatttatttatctaaaccaactttt
tgggagaaagatggctcaccaacacctatgatgtcaaaccaagcgcgtttaaggaactta
acgtactcagcacctctatacgtagatatcacaaaaactataaccaaaggaaataatgaa
cctgaagtaaagtgccacccaaagacgtttattggcaaaatccccatcatgttacgatca
acttattgtttattacacaacatggctgatcatgccttaactgagttaaatgaatgtcct
ttggatgtcggtggttattttatcattaatggttctgaaaaagtactcatagcacaggag
aaaatggcttcaaataccgtctatgtatttcaaaagaaagaatcaaagtacgcgtatgta
gcggaaattaggtctgtaactgaaaattcttctcgtccaacgagtacattgtgggtcagt
atgttagcacgtggtggcggcacatcgaaaaaaagcgtaatcggtcaaaagattgtcgct
gcgatcccgtatgtaaatcaagaaataccgatcatggttgtctttcgtgcacttggattt
gtcgccgatcgagatatcctagaacatatcatttatgattttgatgacccagaattgatg
gaaatggtcaagccttcacttgatgaagctttcgttattcaggagcaaaatgtcgcatta
aattatattggatctcgaggctctcgttctggtgtaactaaagaaaagcgtatcaaatat
gcacgagaaatattacaaaaagaaatgttgccacatgttggtatcagtgattattgtgaa
acaaagaaagcatattttctagggtacatggtccatcgtttattactgacagctctaggg
agacgtgaagtggatgatcgagatcattacggtaacaagagattattccgtaatctactc
aaagaagtcaagatgtatgcacaaaagtttgttgataatgggcgagacttcaacttggaa
cttgctatcaaaacaaagattattaccgatggtttacgatactcactcgctactggaaac
tggggtgatcaaaagaaagctcatcagtcaagagccggtgtttcacaagtattgaaccgt
ttaacctttgtctcaacgctatctcacttacgacgtttaaactccccaattggccgtgat
ggtaaattagctcgccctcgacaattgcacaatactcactgggggatgatctgtccagct
gaaacaccagagggtcaagcagttggacttgttaaaaatttagccttaatggcatatatt
tccgttggttctcagcctagccccatcttagaatttttagaagaatggtctatggaaaat
ctggaagaagtatctcattcagctctagcttcagccacgaagatctttgtgaatggatgt
tgggtcggtattcaccgggatccagaacagctaatgtcaactttaagaaaattacgtcgt
caaatggatgtaattgtttcggaggtatctatggttcgagatattagagatagagaaatc
cgtatttatacagatgctggacgaatctgtcgcccactactgattgtggaaaatcaaaaa
ttagttttaaagaaaaatcatatagagtccatgaaaacagccgatgattacgaagtgttt
ggatggcaagatttaattgcaaacggtattgttgaatatgtcgataccctggaagaagaa
acggttatgatagccatgacaccggactacttaacagctggagttaattactgccgtact
tatacgcactgtgaaattcatccatctatgatattaggtgtctgtgcctcgattattcct
tttccagatcataaccagtcaccgcgaaatacgtaccaatcagctatgggtaagcaagct
atgggggtatacacaacaaattttcatgtccgcatggatacattggctcacgtattgtat
tatccgcaaaagccacttgttacaactcgttctatggaatacttaaggtttcgggagtta
ccagcaggtattaatacaattgtcgccatcgcttcttatactggatacaatcaagaggat
tccattatcatgaataggggagctattgatcgtggtctatttcgatctgtattttatcga
tcatatcgtgaccaagaatccagtggtgattttaattctgaagaaatatttgaaaaacct
tctaaagaaacctgttcaggaatgcataatgcaatgtatgataaattggatgacgatgga
ctggttgctcctggaactcgtgttagtggtggcgacattgttattggaaaaactgcttta
ttacctgaagatgcagatgcgctaggagatactaataaacggttcgtaaagagggatgct
agtacagggttgcgttcgagtgaaagtggaatcgttgatcaagttttattaactgttagc
caagaagggtataaattcaccaaagttcgagttcgatctgttagaataccacagataggt
gacaaattcgctagccgtcatggacaaaaaggaacgtgtggtattacttatcgtcaagag
gatatgccattcacatgtgaaggaattacgccagacattattattaatcctcatgctatt
ccaagtcgtatgacaatcggtcatttgatcgaatgtctacaaggaaaggtttcagcaaat
aagggtgaaattggtgatgctaccccttttaacgacaccctaaccgtacagaaaatttct
agtttgttgtctgattatggctaccatttaaggggcaacgaggtgttgtataatggtttt
actggtcgtaaattaaacacccaagtatttttgggtccaacgtattaccaacgtcttaag
cacatggtagacgacaaaatacacgctcgagctcgaggtcccttacagaatcttacacgg
cagcctatgcaaggccgtgctcgtgatggcggtttacgatttggagagatggaaagagat
tgccaaatttcacatggtgctgcacaatttttacgtgaacgtttatatgacgcgtcagat
ccatacatcgtacacatgtgcaatctatgcggtttggttgctgtggcaaatttaagaaat
gatacttacgaatgtaaaggctgcaggaataaaactaggatttctcaagttcgtattcct
tatgcgtgtaaattgttgtttcaagagttaatgtccatgagccttgcgccaagaataatg
agtagatgtaggagcgatattagtagtggtaaacttattacaaccaaccaaggaaaaact
tgctatcgtagaaatcatgctgtggttcataaaccaacaatcaaattttaa
DBGET
integrated database retrieval system
