Trichoplax adhaerens (placozoan): TRIADDRAFT_60103
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Entry
TRIADDRAFT_60103 CDS
T01069
Name
(RefSeq) hypothetical protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
tad
Trichoplax adhaerens (placozoan)
Pathway
tad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRIADDRAFT_60103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tad03019
]
TRIADDRAFT_60103
Messenger RNA biogenesis [BR:
tad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TRIADDRAFT_60103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
6757349
NCBI-ProteinID:
XP_002116057
JGI:
60103
UniProt:
B3S7B2
LinkDB
All DBs
AA seq
542 aa
AA seq
DB search
MADVEQPAAQDEGSPALSQAENEDQPNVTNHEEQAKEEAQVIKPLVTVRPDSDEPVVDNQ
VQPEEEETPKIEMESQGASKKVIDIEAEGQVDGTPLYEYDIDDSEKPWRKPGADITDYFN
YGFNEEVWKQYCEKQRKLRAEIANGLYNPPPKGSLPSIHKSELNTQAAKTDAVSATAGKR
LPNKAGPPPDRKTEGAIAVIGVADSRRRLDELPATSEINIPQRDTNKNNSSQSRQSQSNV
GPGMVQVNTSIPPPMMSGQQFSQPANQANSASGPIMNNHPNPAPPVQQFLVPPLSHNLPP
PNMQLPPPIPNPPPMVVPGFNAMQGEGIPPAGFHNMNMPPVGMGRGRGRGGMGIPGMGLP
GQGPGEFQPGMEDRPFFAGSGQATSPDIWPPNQEFPQGFNPESRGHSSVSDSENSSESYE
YEHPRSSKEKSSKRRERGRDRDHREHRDRDRDHSDRHRERHRDREHRDHDRDRKHRERDR
DRRDHDRDRREDRRKRDDRNTKEDKKRRRHSAGSSDGETPRRPSKHSKDREEAIADEDVN
AS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgtagaacagcccgcggctcaagatgaaggatcgccagccctttctcaagct
gaaaatgaagatcagccaaatgtaacaaatcatgaggaacaagctaaggaagaagctcaa
gtcatcaaacctttggtaacagtaagaccagatagtgatgaaccagtggtagacaatcaa
gtacagccggaggaagaagaaacgccaaaaatagagatggaatcccagggtgcaagcaag
aaggttattgatattgaagctgaaggacaagtggatggcacccctttgtacgagtatgat
atagatgatagtgaaaaaccatggaggaagccaggtgctgatattactgactactttaat
tacggatttaatgaagaagtttggaagcaatattgcgagaagcaacgcaaattgagggca
gagattgcaaatggattatataatccaccaccaaaaggatcattgccatcaatacataag
agtgaacttaatactcaagctgctaagactgatgcagtgagtgcgactgcaggaaagcga
cttcccaacaaagctggaccgcctccagataggaaaacagagggagctatcgctgttatt
ggagtcgctgacagccgacgcagactggatgagttacctgcaacatcggaaataaacatt
ccccagagggacacgaataaaaataattctagccaatctcgacaatcgcaatccaacgta
ggtcctggtatggtacaggtaaatactagtattccaccgcctatgatgagtggccagcaa
ttttctcagccagcaaatcaagccaattcggctagtggtccaatcatgaataatcatccc
aatccagcccctcctgtgcagcagtttctcgttcctccacttagtcataacttaccacca
cccaatatgcaacttccgccacccattccaaatccacctccaatggttgtaccaggattt
aatgctatgcaaggtgaaggaatacctccggctggctttcataatatgaatatgcctcca
gttggtatgggtagaggccgtggaagaggtggtatgggtatcccgggaatgggcctaccc
ggtcaaggtccaggtgaattccaaccaggaatggaagatagacctttttttgccggctca
ggtcaggcgacttcacctgatatttggcctcctaatcaagaattccctcaaggctttaac
ccagagtcgagaggtcatagctctgtttccgatagtgaaaattctagtgaaagctatgaa
tatgaacaccctagaagtagtaaagaaaagagtagtaaacggcgtgaacgaggacgcgat
cgagatcatcgagaacacagagatcgtgatcgtgatcatagtgaccggcaccgagaacga
catcgagatagagagcatagagatcacgatagagataggaagcatagagagcgagacaga
gatagaagagatcatgatcgagataggagagaggaccggcgcaagagagatgatcgaaat
actaaggaagataagaaaaggagacgccatagtgctggttctagtgatggagaaactcca
cgtcgacccagcaaacattcaaaagatagagaggaagcgattgcagatgaagatgtcaac
gcatcataa
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