Tepidanaerobacter acetatoxydans Re1: TepiRe1_0353
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Entry
TepiRe1_0353 CDS
T02434
Symbol
rho
Name
(GenBank) transcriptional terminator Rho
KO
K03628
transcription termination factor Rho
Organism
tae
Tepidanaerobacter acetatoxydans Re1
Pathway
tae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TepiRe1_0353 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tae03021
]
TepiRe1_0353 (rho)
03019 Messenger RNA biogenesis [BR:
tae03019
]
TepiRe1_0353 (rho)
Transcription machinery [BR:
tae03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TepiRe1_0353 (rho)
Messenger RNA biogenesis [BR:
tae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TepiRe1_0353 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
ATPase_2
bpMoxR
NACHT
CCDC138_C
AAA
Spore_III_AA
AAA_25
Mor
Motif
Other DBs
NCBI-ProteinID:
CDI40355
UniProt:
F4LTZ4
LinkDB
All DBs
Position
345553..346827
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AA seq
424 aa
AA seq
DB search
MLITELEKKTIAQLHEIAKEKKIPGYYKYRKRELIIKIMEAANERGDAVAEGVLEVLPDG
YGFLRIENYLPSDEDIYISPSQIRRFHLRTGDMIAGNVRPPKEGEKYRAVLQISAVNGLD
PEHAVCRYHFDSLTPIFPNSRFILEHDPQELSTRIIDIIAPIGKGQRALIVSPPKAGKTM
MLKNIANSLTQNHPEVQLIVLLIDERPEEVTDIRRSVEGEVVSSTFDELPENHLRVADMV
LERAQRLVESRKDVVILLDSITRLARANNLVVPPTGRTLSGGLDPSALHKPKRFFGSARN
IEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEIHLDRKLAERRIYPAIDIKKSGTR
REELLLSKEELEATWVLRKALASVDNVEATSIIINKLRKTKTNREFYESLATFVNEMQNN
KGTY
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
ttgcttattacagaactggaaaaaaagacaatagcgcagctacatgaaattgctaaagaa
aagaaaataccggggtattataaatatcgaaagcgcgagcttattattaaaataatggaa
gcagctaatgaacgtggggatgcggtggcagaaggagtactggaagttttgcccgatggc
tacggctttttaagaattgagaactatttgccttcagatgaggatatatacatatcacca
tcgcaaatacgtcgctttcatttgagaaccggtgatatgattgccggaaatgtaagacct
cccaaggaaggcgagaagtatcgagcggtgcttcagatttctgcggtgaacggtttagat
ccggaacacgctgtttgcagatatcattttgattcactgactccaatctttcccaactca
cgctttatactggaacatgatcctcaagagctttctacgcgcattatcgatattattgct
ccaataggaaaaggccagagggcactaattgtatctccgccaaaagcgggcaagaccatg
atgcttaagaatatagctaacagccttacacagaatcacccggaagttcagctcatagtg
cttttgattgatgaaagacctgaagaagtaacagatattagacgctctgtagaaggcgaa
gtggtaagttctacatttgatgaactgcctgaaaatcatttaagggttgctgatatggta
ttagaaagggcacagcgcttggtggagagcagaaaagatgtggttatccttctagacagt
ataacccgcttagctagagccaacaacttagtggtacctcctacaggcaggactctttcc
ggcggtctggaccccagcgcgcttcacaaaccaaagcgctttttcggatctgccaggaat
attgaagaaggcggcagcttgacaattatagctacagcattagtagaaacgggaagccga
atggatgatgtgatttatgaagaatttaaaggaacaggaaatatggagatacaccttgat
agaaaactggcagagcgcaggatatatcctgccattgacataaaaaagtccggtacgcgt
agggaagaattattgttatccaaggaagaattagaagctacatgggttttaagaaaagcc
ttggcttctgttgacaatgtggaggctacatctattatcataaataaattaagaaaaaca
aaaacaaatagagagttttatgaaagcttggcaacgtttgttaatgaaatgcaaaacaat
aaagggacatattag
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