Tepidanaerobacter acetatoxydans Re1: TepiRe1_1554
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Entry
TepiRe1_1554 CDS
T02434
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tae
Tepidanaerobacter acetatoxydans Re1
Pathway
tae03410
Base excision repair
tae03430
Mismatch repair
tae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TepiRe1_1554
03430 Mismatch repair
TepiRe1_1554
03440 Homologous recombination
TepiRe1_1554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tae03400
]
TepiRe1_1554
DNA repair and recombination proteins [BR:
tae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TepiRe1_1554
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TepiRe1_1554
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TepiRe1_1554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
CCP26312
UniProt:
F4LVK2
LinkDB
All DBs
Position
complement(1478193..1480778)
Genome browser
AA seq
861 aa
AA seq
DB search
MINGNYIWQVGSTQEVDDNYDEFHHVILQLLKKRGIVTPEQIHGYIYPKLDNLYDPMLLK
DMDKAVVRIKEALSKKQKVTIYGDYDADGITSCAVLMKLLKNLGGTVNYYIPSRLDEGYG
LNKDAIDMIHKQGTKLIITVDNGISSCEEVQYASSLGLDVIITDHHEPQQKMPQAAIAIV
DPKREDCSYPFKELAGVGVALKLACALKGKDLKFGKELLELAAIGTVADIVPLLDENRII
VKNGLDDLGNTKNLGLKAMMNLLNLNDISIEPGKISYLLAPRLNAAGRIANPEIAVELLL
CEDAKRAFELATTLERINQERQTLEAKILDEAKTVIEQEIDLDIENIIVISSANWHPGVT
GTVASKLVEIYSRPCIIISEKGDEGRGSGRSISGFNLFNALSKLSHLLIRFGGHEQAAGL
SIKVENIGTFRRELNQLFVQDTVQKDASPKLDIDLELNQSDINLKLAEQLELMKPFGYGN
PKPVFMCRNLHIQNLRTVGSGDKHLKLNLKSHENNIDAIGFNFGLYKEDLDMATIMDAAF
YLEVNRWKGSIEPQLNIKDLRVPFFRDELLLDVENNYYRYFYSYLNVLNGKSIRTSSEDK
LINEDNMLILKNKRIQAKIGYINSLLKAKSKVMIAINTPYKAWQLLTYLREDDDLRNRAK
VSYCLDLPAQSHDYNVIAVNPLAICNNKNFEDIVFYDTPFSVDILKKQLAEVPPNSKTHI
LFEREDLRYNYLVCQQILPSINELKVVYQMIGKLTLGTFEGSLNINEFRNLLQKQSGIDM
HLCRLINVFKIFQEIGIIKLNIEDGFFHILGHEKHNNKFQLERSKTYLHLYLLKRNVVEF
YNKFQILQSDIFMNVEEIEWT
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgattaatggcaactatatatggcaagtagggtcaacacaagaagttgatgataattat
gacgaatttcaccatgtaatcctgcaattgctcaaaaaaagaggtatagttacacctgag
cagattcatggatatatatatcctaaactggataacttatatgaccctatgctgctgaaa
gatatggacaaagctgttgtacgcattaaagaagccctatcaaaaaaacaaaaagttaca
atttatggtgattatgatgctgacggaataaccagctgtgctgttcttatgaagttatta
aaaaatttaggcggaacggttaactattatataccttcaagactagatgaaggctatggt
ctcaataaagatgctatagatatgatacataagcaaggaacaaagctaattataactgta
gataatggcattagttcatgtgaagaggtacaatatgcttctagcttaggcttggatgtt
atcattactgaccatcatgagcctcagcaaaaaatgcctcaggctgctattgcaatagtt
gatcccaaaagagaagattgcagttatcctttcaaagaattagcaggtgttggtgtggcg
ttgaaacttgcatgtgctctgaagggtaaagatttaaagtttggaaaagagctacttgaa
ttggcagctattggtaccgtggcagatattgttccactgttagatgaaaaccgaataatt
gtcaaaaatgggcttgatgacttaggaaatacaaaaaatttaggtcttaaagcgatgatg
aatctgttaaacttaaatgatatttcaatagagccgggaaagattagctatttattggca
ccaagattaaatgctgccgggaggatagcaaatcccgaaattgctgtagagcttttgcta
tgtgaagatgcaaaacgagcttttgaacttgctacaactcttgaaagaattaatcaggaa
aggcagactctcgaagctaaaatattagacgaagcaaaaacagtaatagaacaggaaatt
gacttagatatagaaaatataatagtaatttccagtgccaactggcaccctggagttacc
ggaacagtagcttcaaaactggtagaaatctatagcaggccgtgtattataatctcagaa
aaaggtgatgaaggccggggctctggaagaagtatttcgggatttaatctctttaatgca
ttaagtaagttatctcatctccttataaggtttggaggtcatgaacaggctgctggttta
agtatcaaagtagaaaatattggtacatttcgaagggaattaaatcaacttttcgtgcag
gatactgtgcaaaaagatgcaagtcctaagcttgacatagatttggaattaaaccagagc
gatattaatttgaaactggcagagcagctggagcttatgaaaccatttggatacgggaat
cctaagccggtatttatgtgtagaaacttgcatattcagaacttaaggacggtgggcagc
ggagataaacacttaaaattaaatctaaaaagtcatgaaaataatattgatgctatagga
tttaactttggcctttataaggaagatttagacatggcaacaataatggatgcagctttt
tatttagaagtaaatcggtggaaaggatccatcgaaccacagttgaatataaaagattta
agagttcctttttttagagatgaattgctgcttgatgttgaaaataattattatcgatat
ttttactcctacttaaatgtcttaaatggaaaaagcattaggacgtcaagtgaggataaa
ttaataaatgaagataatatgcttattttaaaaaataagagaattcaagcgaagatagga
tatataaattcacttttaaaagcaaaaagcaaagtaatgatagcaataaatacaccgtat
aaagcatggcagctattgacgtatctaagagaagatgatgatttaaggaacagagccaaa
gtgtcttattgcttagatttacctgctcagagtcatgactataatgttattgcagtaaac
ccattagctatatgcaataataaaaattttgaggatatagtattttatgatacacctttt
agtgttgatattttaaaaaaacaattagccgaagtaccaccaaattcaaagacgcatata
ctttttgaacgagaagatttacgctataattacttggtgtgtcagcaaattttaccaagt
attaatgaattaaaagttgtgtaccaaatgattggaaaattaactttgggaacttttgaa
ggttctctaaacataaatgaatttagaaatttgttacagaaacagtcagggatagatatg
cacctgtgtagattgataaatgtttttaaaatatttcaggaaataggcattattaaactt
aatatagaagatggtttttttcatatattaggtcatgaaaagcacaataataagtttcag
ctggaacgttccaaaacatatttacatctttatctacttaaaaggaatgtagtagaattt
tataataagtttcaaattttacaatcagatatatttatgaatgtggaggaaattgaatgg
acttga
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