Tichowtungia aerotolerans: GT409_02835
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Entry
GT409_02835 CDS
T07773
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
taer
Tichowtungia aerotolerans
Pathway
taer03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
taer00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GT409_02835 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taer03021
]
GT409_02835 (rpoC)
03400 DNA repair and recombination proteins [BR:
taer03400
]
GT409_02835 (rpoC)
Enzymes [BR:
taer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GT409_02835 (rpoC)
Transcription machinery [BR:
taer03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GT409_02835 (rpoC)
DNA repair and recombination proteins [BR:
taer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GT409_02835 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QHI70863
UniProt:
A0A6P1MCM5
LinkDB
All DBs
Position
complement(667020..671222)
Genome browser
AA seq
1400 aa
AA seq
DB search
MIVDTRSAADILGGGEDSSSDVASIKLASPEDIRSWSFGEVKNPETINYRTFKPEKGGLF
CERIFGPSKDWECSCGKYKRIKHKGVICDRCGVEVTLSRVRRERMAHIELAVPVSHIWFF
KATPSRMSLLLDMTMRNLEHVIYYDDYVVVDPGDTPLKEKQLLSELEYREALDNYGVGSF
DARIGAEGIRELLKKIDLPEKLRELEDALAATRSKMTRKKLVQQMKVIEGLIKSKSRPEW
MTFEVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKTLLALKTPEVIIRNEK
RMLQQSVDALFDNGRHGRAVSGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIV
VGPSLKLNQCGLPKKMALVLFEPFIIRKLKERGIVHTVRSAKKMIEREEEVVWDILDEVT
QGHTVMLNRAPTLHRLSIQSFEPVLIEGNAIQVHPLVCTAYNADFDGDQMAVHVPLSVEA
QIESKALMLAPNNVFSPSSGKPITTPTQDIALGIYFMTSFSQKYIMESRRRDSKKEQERL
PLFADIHEVHTAFDEGAVGMHDRIRYRNPDRQTETKFGDPEKTVIETTVGRVFFNEVWPV
GLGFVNERVNKKLLGKLIEHCYEKAGHDETVHVLDRLKELGYANATAAGISIGLSDMIIP
PEKAELVAASRKEIREVEDKYKKGIITDGERYNMVIDKWTDANDKLTNRLFSALETNDDP
VNAQSKDDLNPVFIMVDSGARGSRQQIRQLAGMRGLMAKPSGEIIERPILANFREGLSVL
EYFISTHGARKGLADTALKTADSGYLTRKLVDVAHDIIIMEEDCHTLNGIEVSAITDGED
ELVSLSARIIGRTACDDIFDPHSPSEVIVAANEVIDEYSARKIERVGIETIRIRSVLTCD
SRRGVCSKCYGRNLASGKDARLGEPVGIIAAQSIGEPGTQLTMRTFHIGGTASSVFKQPK
ISAKEDCVIRYENLRTVKIEGGNVILNKNGYVVTYDDDGRELERYSTVIGATVSVDDGDR
VKTGQTFVTWDPYSVPILSEQNGEVDFHDFIEGVTVQKAEDETTGVEGLVVLEHKEDLHP
QIVITDNAGKALAYYSIPAGAHVMVAKGDEISAGSTLAKTPRKQARTKDITGGLPRVAEL
VEARRPKEAAEIAKIDGIVELGGIAKGKRQLIIKDLATGTEEEHLIPMGKHIIVYGGDLV
SKGQQLTEGPVVPQELLEVCGPQELQEYLVNEVQAVYRLQGVEINDKHIEVIVRQMLRKV
KITDPGDTEFLWGEQVEKQKFQEVNQTAMMEGRRPAEASPVLLGITKAALATESFISAAS
FQDTTRVLTQAATLGRIDQLRGFKENVIMGHLIPAGTGFPMYKNIRPVKLGEEISVEDAL
GVDPLAAAQEGSETSSMPEL
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atcatcgtggatacacgtagcgcagcagacatactcggcggcggagaagactcttccagt
gatgtagcaagcattaagctggcttcgccggaagacatccgttcctggagtttcggggag
gtcaaaaaccccgaaacgattaactatagaacattcaagccggaaaagggcggtttgttc
tgtgagagaatcttcggcccgtcgaaagactgggagtgtagttgtgggaaatacaaacgc
atcaaacacaaaggtgttatttgtgaccgatgcggtgtggaagtaaccctttcgcgtgtt
cgtcgcgaacggatggctcatatcgagctggctgttccggtgtcgcacatctggttcttc
aaggcgaccccgagccgcatgagcctgcttctggacatgaccatgcggaatcttgagcat
gtgatctactacgatgattacgtcgttgttgatcccggcgatactccgctgaaagaaaaa
cagcttctttccgagctcgaatatcgtgaagctctggataactacggcgtcggcagcttt
gatgcacggatcggcgccgaagggattcgtgaattgctcaaaaaaatcgatcttccggaa
aaactccgtgaactcgaagatgcattggctgccactcgcagtaaaatgacccgcaaaaag
ctggtccagcagatgaaggttattgaaggcctcatcaaaagcaaatcgcgcccggagtgg
atgacctttgaagtgcttccggtgattccgccggacctgcgcccgctcgttccgcttgaa
ggtggccgttttgccacctccgacctgaacgacctgtaccgccgtgtgatcaaccgcaat
aatcgtctgaaaaccctgttggctctcaaaacgccggaggtgattatccgcaacgaaaag
cggatgctccagcagtcggtggacgcgctgttcgacaacggccgccacggtcgtgcggtc
agcggtcccggaaaccgtccgctcaagtctctcagcgatatgctgaaagggaaacagggc
cgtttccgtcagaaccttctcggtaaacgtgtggactattccggacgttccgtgattgtg
gttggcccgagcctcaaactgaatcagtgcggattgccgaagaaaatggcgcttgtgctg
ttcgaacctttcatcattcgcaagctcaaagaacgcgggatcgtgcacaccgtgcgcagt
gctaaaaaaatgattgagcgcgaagaagaggtcgtttgggatattctcgacgaagtgacc
cagggtcataccgtcatgctcaaccgtgcgccgactcttcaccgcctgtcgattcagtcg
ttcgagccggtgttgatcgaagggaatgcgattcaggtgcatccgcttgtgtgtaccgct
tacaacgcggacttcgacggtgaccagatggctgtgcatgtcccgctttccgtggaagca
cagatcgagtccaaagcactgatgctggctccgaacaatgttttctccccgtcgagcgga
aaaccgatcaccacaccaacgcaggatattgcgctggggatctatttcatgacctcgttc
tcccagaaatacattatggagtcgcggagaagggacagcaaaaaagagcaggaacgtctg
ccgctgtttgctgatattcacgaagtgcacaccgcttttgatgaaggtgcagtgggaatg
catgaccgcattcgctatcgcaatcctgaccgccagaccgaaaccaaattcggcgatccc
gaaaaaacagtgattgaaacaaccgttgggcgtgttttcttcaatgaagtctggccggtg
ggtctcggttttgtgaatgaacgggtcaacaaaaagctgctcggaaaactgattgagcac
tgctatgaaaaagccggtcatgatgaaaccgtacatgtgctggatcgcctgaaagaactc
ggctatgccaatgcaactgcagccggaatttcgatcggactgtccgacatgattattccg
ccggaaaaagcagaactggttgcggcttcccgcaaagaaattcgcgaagtcgaagacaag
tataagaaggggatcattaccgacggtgagcgttacaacatggtcattgacaaatggacc
gatgcgaacgacaaactgaccaatcgtctgttcagtgcgctggaaaccaatgatgatccg
gtgaatgcccagtccaaagacgacctgaacccggtgttcatcatggtggattcaggtgcc
cgtggatcgcgtcagcagattcgtcagctggccggtatgcgcggactgatggccaagccg
tccggtgaaattattgaacgcccgattctcgcgaacttccgtgaaggtctttccgttctc
gaatacttcatttcgacgcatggtgcccgtaaaggtctggccgataccgcgcttaaaacc
gctgactccggttatctgacccgcaaactggtggacgttgctcacgatattatcattatg
gaagaagactgccataccctcaacggtattgaagtcagcgccattacagatggtgaggat
gaactcgtttcgctttccgcccgtatcatcggtcgtacggcatgtgatgacatcttcgat
ccgcacagtccaagcgaagtgattgtggctgcgaatgaagtgatcgatgaatactccgcg
cgtaaaatcgagcgtgttggtattgagaccattcggattcgcagtgtactgacgtgtgat
tcccgtcgcggtgtctgttccaaatgctatggccgcaacctggcttccggaaaagatgct
cgtctgggtgagccggttggtattatcgccgcccagtccattggtgagccgggtacccag
ctgaccatgcgtacgttccatatcggtggtactgccagctccgtgtttaagcagccgaaa
atttcggccaaggaagactgcgtcattcgttacgaaaaccttcgtaccgtgaaaatcgaa
gggggtaacgttattctgaataagaacggctacgttgtaacctacgacgatgacggacgc
gagttggagcgctattcaacggtcatcggagcgacggtttcggtggatgatggtgatcgg
gtgaaaaccggccagacatttgtgacctgggatccgtattccgtgccgattctgtcggaa
caaaacggggaagtcgacttccacgactttatcgagggcgttaccgtccagaaggcggaa
gatgaaaccaccggggtggaagggctcgttgttctcgaacataaagaagaccttcatcct
cagatcgttattaccgataacgccggaaaagctttggcttactattccattccggccggt
gctcacgtgatggtggccaagggcgacgagatcagcgccggttccacgctggccaaaacg
cctcgtaagcaggctcgtaccaaggatattaccgggggtcttcctcgtgtggcagagctg
gttgaagcccgccgcccgaaagaggctgctgaaatcgccaagattgacgggattgttgaa
ctgggcggaattgccaaagggaagcgccagctcatcatcaaagaccttgcgaccggaacc
gaagaggagcaccttatcccgatgggtaaacacatcatcgtttacgggggggacctggtt
tccaagggacagcagcttacagaaggtccggttgttccgcaggaactgctcgaggtctgc
ggacctcaggagcttcaggaatatcttgtgaatgaagttcaggctgtgtatcgcctgcag
ggtgtggaaatcaacgacaagcacattgaggtgattgttcgtcagatgcttcgcaaggtg
aaaatcacggatccgggtgacaccgaattcctctggggtgagcaggttgaaaaacagaag
ttccaggaagtcaaccagaccgcgatgatggaaggccgccggcctgccgaagcgtctccg
gttctgctggggatcaccaaagctgccttggcgaccgagagctttatttctgccgcatcc
ttccaggatacaacccgtgttctgacgcaggctgctacgctgggccgtatcgaccagctg
cgcggattcaaagaaaacgtcatcatgggtcatttgattcctgctggaaccggattcccg
atgtacaaaaacatccgtccggtcaagcttggcgaagaaatcagtgtggaagacgctttg
ggtgtcgatccgctggccgccgctcaggaaggatccgaaacgtcttcgatgcccgaactc
taa
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