Triticum aestivum (bread wheat): 123039187
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Entry
123039187 CDS
T07757
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123039187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123039187
03019 Messenger RNA biogenesis [BR:
taes03019
]
123039187
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123039187
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123039187
U7-dependent histone pre-mRNA processing factors
123039187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF3213
Beta_lactamase3
DUF1815
Motif
Other DBs
NCBI-GeneID:
123039187
NCBI-ProteinID:
XP_044318387
LinkDB
All DBs
Position
2B:complement(246504274..246530031)
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AA seq
347 aa
AA seq
DB search
MALVYLYYTGPEQAGPGPAQVHQGDGPPPHATVHLPRATAHLPSATAHLPRLPHNSWPPT
PPHSPYPFTPHSTHFICPFPFRRRIAARVDELPAALLRPFIVYHSAIFGNFKGRTVLFDC
GIHPAYSDMAALPYSDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKA
IYRLLLSDYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLG
AAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKR
FTDAIHNTVSQGGRVLIPAYALGRAHERFLILDEYWSNHLELHKIPY
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atggccttggtttatttatattacacagggccagaacaagctgggccaggcccagcacaa
gtgcatcaaggcgacggcccacctccccacgcgacagtacacctcccccgcgcgacggcc
cacctccctagcgccacggcacacctcccccgcctcccgcataactcgtggccacctacc
ccgccccattcaccttatcctttcactcctcactccactcacttcatctgcccctttccc
ttccgccgccgcatcgccgcgcgcgtcgacgaactgccggccgcgctcctccgccccttc
atcgtctaccactccgccatcttcggcaacttcaagggccgcaccgtcctgttcgactgc
ggcatccacccggcctactccgacatggcggcgctgccctactctgatgagatcgacccc
tccaccatcgacgtcctcctcgtcacccacttccacttggaccacgccgcctcgctgccc
tacttcctcgagaagacgacgttcaagggccgcgtgttcatgacccacgccaccaaggcc
atctacaggctgctgctctcggattacgtcaaggtcagcaaggtgtcggtggaggacatg
ctgtttgacgagcaggacatcatccgttccatggacaagatcgaggtcatagacttccac
caaacacttgaagttaatggcatacgcttctggtgctatactgctggccatgtacttggt
gctgccatgttcatggtggatattgccggtgttcgcattctttacaccggtgactactcc
cgtgaagaagaccggcacctaaaagctgctgagatcccccaattctcccctgatatttgc
attattgagtcaacttatggcgtgcagcaacaccaaccccgccatgtcagagaaaagcgc
ttcactgatgccatccacaacactgtttctcaaggggggcgtgttcttatcccggcatat
gctcttggtagagcacatgaacggtttcttatcctggatgagtattggtctaaccaccta
gagctccataagattccatattag
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