Triticum aestivum (bread wheat): 123044089
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Entry
123044089 CDS
T07757
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123044089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123044089
03041 Spliceosome [BR:
taes03041
]
123044089
03009 Ribosome biogenesis [BR:
taes03009
]
123044089
03016 Transfer RNA biogenesis [BR:
taes03016
]
123044089
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123044089
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123044089
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123044089
Complex C
U4/U6.U5 tri-SnRNP related factors
123044089
Ribosome biogenesis [BR:
taes03009
]
Eukaryotic type
Pre-60S particles
Helicases
123044089
Transfer RNA biogenesis [BR:
taes03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123044089
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ArAE_1_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
123044089
NCBI-ProteinID:
XP_044322661
LinkDB
All DBs
Position
2B:162245485..162254542
Genome browser
AA seq
1006 aa
AA seq
DB search
MEEVENSSKRKAPELSSEDNSSAAVLDEQQSLPGSTAKRPNLARSCIHEVAVPNGYDLSK
DEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAI
AMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAM
LYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEW
ICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPS
QPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSM
SKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSGRAGR
RGMDARGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHV
IRNSFHQFQYEKALPEVIQKITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEM
IRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASSTLPPALSAPRNNYIVDTLL
HCSSSSSENGANGPRSKPCPPRQGEKGEMHVVPVPLPLLSGLSSVRISIPTDLRPPEARQ
NILFAVQELGKRYPQGLPKLHPITDMGIEEPELVDLVHKLDGLEQKLCSHPLNKSDQSEQ
QLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAA
CLIDTGDELLITELMFNGTFNELDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMMQLSE
AARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRL
VRRLDEFLNQLKAAAEAVGEVNLEKKFGLASESLRRGIMFANSLYL
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtggagaattccagcaagcgtaaagcacccgagctgagctcggaggacaat
tcctccgctgctgttctggacgagcagcagtcgctgcctggctcgactgccaagcgtccg
aacctcgcccggtcgtgcatccatgaggtcgctgtccccaacggctacgatttgtccaag
gatgaggccgtacatgggaccctttcaaaccctgcgtttaatggggagatggccaagaca
tacccgtttcagctcgaccccttccagagcatctccattgcgtgcctggagcggaacgaa
tctgtcttggtctcggctcacacctctgcggggaagacggccatcgctgagtacgccatt
gcaatgtcgttcagagacaagcagagggtgatatacacctctccgttgaaggctcttagt
aatcagaagtacagggagcttagtcaggagttctctgatgttggattgatgactggtgat
gttacgcttcagccaaatgctacttgcctggtcatgacaacagaaatcctgagggcgatg
ctttataggggctccgaggtgatcaaggaagttggttgggttatatttgatgagatccac
tacatgaaggatcgtgagagaggcgttgtgtgggaagagagtatagttttcctgccccct
gccatcaagatggtctttctttctgctaccatgtcaaatgcaaccgagttcgctgagtgg
atatgcaatctgcacaagcagccttgtcatgtggtgtacacagacttcaggccaacaccg
ctacagcactatgtgttcccaataggtgggtctggtctctaccttgtagtggatgaaaat
ggtcagttcagggaggataattttctaaagctgcaagacacatttgcaaagcaacctagt
caaccagatgggaggaagggcggtgggcctaaagccagtggccgaatcgcaaaaggtgga
aatgcttctggaacatctgacatatacagaattgtcaagatgattatggaccgcaagttt
caaccagtcataattttcagctttagtagaagagaatgtgagcatcatgccatgtcgatg
tcaaaacttgatttcaacactcaggaagaaaaggataacattgagcaggttttccgtagt
gctattttctgtttaagtgaggaagatagagggttacctgctatagagttgatgttgcct
cttcttaaacgaggtattgcagtacaccattctggactgcttccattaattaaagagctg
gtggaattgctcttccaagaaggtcttgttaaagctctttttgctactgagacgtttgcc
atgggcctgaacatgcctgcaaaaacagttgtcttcacatctgtcaagaaatgggacggt
gatagtaaccgctatattgcttctggagaatatatacagatgagtggaagagctggtcga
cgtggcatggatgcacgtggtatttgtgttataatgattgatgagaagatggaaatgagt
gttatcaaggacatggtgttaggtaaaccagcgcctctcatcagtacttttcgactgagc
tactacactattctgaatttactgagtcgtgcggagggccaatttactgctgaacatgtg
atccggaattcattccaccagtttcagtatgaaaaggcattacctgaagtcattcagaag
attacaaagttggaaaatgaagctacattgctggactcttctggagagaatgatcttgcc
gagtatcacaagttagggcttgatatatctgaacttgaaaagaaaatcatgtctgagatg
attagaccagagagagctttgttatatttggtccctggaaggctggttaaagtcagagat
ggctcaacagactgggggtggggtgtggtcgtaaatgttgtgaagaaacctccagcatct
agtactctcccccctgcattaagtgcacctcgcaataactatatagtggataccttgctt
cattgttcttcaagttcaagtgagaatggagccaatggaccacgttcaaagccatgccca
cctcgccaaggggagaagggagaaatgcatgtggtgcctgtaccattacctttattatct
ggtctaagcagtgttagaatcagcattccaactgatctacgaccacctgaagcgagacaa
aacatactctttgcagttcaagaactaggaaaacgttacccccaagggcttccaaagcta
catccaattacggacatgggtattgaagaacctgaattagttgacttggttcataaactt
gatggtctcgagcagaaattatgttctcatccacttaataagtctgatcaaagtgagcag
caactgtcatggtaccaaagaaaggctgaactgaatcatgaaattcaacaactaaagtca
aagatgcgggattcacagctgcaaaaatttagggatgaactaaagaaccggtctcgcgtt
ctaaagatgcttggtcacattgacacggatggtgttctccagctaaagggacgtgctgcc
tgtttaatagacactggggatgagctgcttatcactgaacttatgttcaacggtacattt
aatgaacttgatcaccatcaagttgcttctgttgttagctgctttgtaccgtgtgagaag
tcaagtgagcaaatacgcctgagaaatgagctttctaagccaatgatgcaactctcggag
gctgcaagaaaaatagctgaggtacaacgagaatgcaaattggacgtaaatgtggaggaa
tacgttgaatcaacttgtaaaccctatctgatggatgtcatatactgctggtcaaagggc
gcgacctttggagaggtgatagaaatgactgacatttttgaaggaagcatcatacggcta
gttaggaggctggatgaatttctaaatcagctaaaagctgctgctgaagccgttggggag
gtaaaccttgagaagaagtttgggttggcgagcgaaagcttgcgtcggggtatcatgttt
gccaactcattgtacctgtga
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