Triticum aestivum (bread wheat): 123051861
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Entry
123051861 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123051861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123051861
03041 Spliceosome [BR:
taes03041
]
123051861
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123051861
Spliceosome [BR:
taes03041
]
Complex B
Other components
Prp19-related factors
123051861
Complex C
123051861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
ARM_TT21
TPR_15
ARM_TT21_C
TPR_5
TPR_16
Motif
Other DBs
NCBI-GeneID:
123051861
NCBI-ProteinID:
XP_044330784
LinkDB
All DBs
Position
2D:90658206..90662825
Genome browser
AA seq
933 aa
AA seq
DB search
MPSAAAGPAEVALAPPAKAAALPFAGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVA
RAAAPFAKRAVIYERALKALPGSYKLWHAYLRERLDHVRPHPISHPAYASLNNTFERALA
TMHKMPRVWVLYLTSLLDQRLLTRGRRNFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSFRVFRRYLQFDPSHAEDFIEFLVSAERWQEAADRLASVLNDDGFRSVKGKTRHQLWLE
LCDILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGV
SSVMTVQEFSVVFEAYTQFEQSMLAAKLEAAEEDGAAGSDEGEKGSKKNKVEKLEKELAA
CWLNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFDKDPAKQVATY
VEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKAVDHLATIWCE
WAEMELRNQHFDKAIELMRLATAEPSVEVKRRAAAEGDEPVQLKLHKSLKLWSIYVDLEE
SLGSLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKD
IWVTYLTKFVKRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNV
YDEAVRAVPNTEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDKDVMVMCMKFAEL
ERNLGEIDRSRAIYIHASNYADPNSHPEFWKKWNDFEIQHGNEDTFREMLRIKRTVAASR
SQTHFILPEYLMQRDQKLNMDEAVDTLTRAGVPQDEMAALERQLASGPSPAPAAAPSTST
TPANRMMNFVSAGVEARAESSTQQAAANNEDIELPEEESDEEDDVQIAERAVPEAVFGEL
GKRAAESREESSSAQENNEQQLGALERIKRRRQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggccgccgcgggtccggcggaggtggcgctggcgccgccggcgaaggcggcc
gcgctcccgttcgccgggatctcgccggacctctacccgacggaggacgacctgccctac
gaggaggagatcctgcgggagcccttcaagctcaaggggtggtggcgctacctcgtcgcc
cgcgccgccgcgcccttcgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctg
ccggggagctacaagctctggcacgcctacctccgcgagcgcctcgaccacgtgcgcccg
cacccaatctcccacccggcctacgcctccctcaacaacaccttcgagcgggcgctcgcc
accatgcacaagatgccgcgcgtctgggtcctctacctcacctcgctgctcgaccagcgc
ctgctcacccgcggccgccgcaacttcgaccgcgccctccgcgcgctgcccgtcacgcag
cacgaccgcatctggccgctctacctgcgcctcgcctcgctcccggcctgccctgtcgag
acgtccttccgcgtgttccggcgctacctccagttcgacccctcccacgccgaggacttc
atcgagttcctcgtctcggctgaacgctggcaggaggcagccgaccgcctggcctccgtg
ctcaacgacgatggcttccgctctgtcaaggggaagaccaggcaccagctctggctcgag
ctctgcgatatcctcactaagcatgctgatgaggtcgcagggctcaaggtggatgccata
ctgcggggcgggatacgcaagttcaccgacgaggttggcaagctgtggacctcgctggcc
gattactatgtcaggaggaccctctatgagaaagcaagggacgtcttcgaggagggggtt
tcttcagtgatgacagtgcaggagttcagtgtggtgtttgaggcttatacacaatttgag
cagagtatgcttgcggcaaagctggaggcagctgaagaggacggggctgcggggagcgac
gagggtgagaaagggagcaagaagaataaggtggagaagctagagaaggaacttgcagcg
tgttggttgaatgatgaagatgacactgatttgaggctggcaaggtttgagcggctattg
gatcgcagaccagagctccttagcagtgtcctgttgagacagaatccacataatgtggag
gagtggcacaggagggtgaaactttttgacaaggatcccgcaaagcaagtagcgacatat
gtcgaggctgtgaaaactgtggacccaatgaaggcagttgggaaacctcatactctatgg
gtggcatttgcaaagatgtatgagaaacataaccgcttagatagtgctgaagatatcttt
aaaaaggccacacaagtgaactataaagcagtggaccacttggctactatttggtgcgaa
tgggccgaaatggagctccgcaaccaacattttgacaaggcaattgagcttatgaggtta
gccacagcagagccctctgttgaggtgaagaggcgagctgctgccgagggtgacgagcca
gtccagctgaaattacataaatctctgaaattatggagtatctatgttgacctggaggag
agccttgggtcgttggaaacaacccgtgctgtttatgagaggatattagatttaagaatt
gccactcctcaaataattcttaattacgcatttcttcttgaggagaacaagtatttcgaa
gatgcatttaaagtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggat
atttgggtgacctacctcacaaagtttgtaaagaggtaccagcgaagcaagttagagcgg
gcaagagagctgttcacggaagctgtcgaaaaggctccgccgcacgaaaagaaggcctta
tatttgcaatatgctaaactggaggaagactatggcctcgcaaaacgtgccatgaatgta
tatgatgaagctgtaagggctgttcccaacactgaaaagatgagtatgtatgaaatatac
attgcacgtgctgctgaacttttcggtgttccaaggactagacaaatatacgagcaagct
atagaatctggtctcccagacaaagatgttatggtgatgtgcatgaagtttgcggaactt
gaaagaaatcttggagaaattgaccgttcccgggctatttatatccacgcctccaactat
gctgatccaaattctcacccagagttctggaaaaaatggaacgactttgagatccaacac
ggcaatgaagatacattcagggagatgcttcgcatcaagcgtacagtggccgctagccgc
agtcagactcatttcatccttccggagtacctgatgcaaagggatcagaagctaaacatg
gatgaggcggtcgacactctgacgcgtgccggtgtcccgcaggatgagatggccgcctta
gaaaggcagctagcttctggaccatccccggcgccagcagcggctccaagcaccagtacg
actcccgcaaacagaatgatgaactttgttagtgccggagtagaggcacgggccgagagc
agcacgcaacaggctgctgctaacaacgaggacatcgagctgcccgaggaagagagcgac
gaggaggacgatgtccagatcgcggagagggctgtccctgaagccgtgtttggcgagctc
ggcaagagagccgcggagagcagggaggaaagctccagtgctcaagagaacaacgagcag
cagctgggcgctctcgagagaattaagcgaaggcgtcaatag
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