Triticum aestivum (bread wheat): 123052578
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Entry
123052578 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123052578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
taes03041
]
123052578
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123052578
Spliceosome [BR:
taes03041
]
Complex C
Other components
Step II factors
123052578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
AAA_24
AAA_30
AAA_16
nSTAND3
ResIII
T2SSE
ABC_tran
NB-ARC
Sigma54_activ_2
AAA_7
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
123052578
NCBI-ProteinID:
XP_044331759
UniProt:
A0A3B6DAY4
LinkDB
All DBs
Position
2D:206637934..206646426
Genome browser
AA seq
1403 aa
AA seq
DB search
MLYGPEVNAANLRERSKRCLVTRAGERAAVHLSLICFPIPKPSGGGDSNSGRPSPSPSPP
PVRPALPLRRSAPPGLPRTGSAARGSSLRPPCCRCLLAPSTSSPLLHRCTADPSSTDHGT
APVLHQGIPSSKFLAPPLPMMSSDGRLDLDATTSTLGPEDDTAQGLILPTKDKVMYRPPP
GKSALGLDLLAHKKREKEVNNSFKRPPEKVVTAASSMDEDERPGSTENDASSLSGVDRGI
VARRYRGTNSSEKTSSKESTVTDENERGLTPRHRDESHRQQTPASRYEPDDDRRSRDKRG
ERETSASIGYSSSGRRGYRDDRESNSRRNERSRSTSIDYTNKRSRDDYSSRSSRTPARSD
WDSGRWEWEDTPRREYRDDRPGSQRHYPTRSPMLAAASPDARLVSPWLGGNTPRSAASPW
DHVSPSPAPVRASGSSKGSSYSSSSGRSHLLTFSNDAEADRSPSAADRNYDITEEMMQEM
DYNADRAWYDCEEHNTVFDGDNYAADDSSYKKKEAQLPKKLTRKDGSLMTLSQSKKLSQM
TADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVYTKQAEPV
MPLKDPTSDMAIIARKGSVLVREIREKQSQNKSRQRFWELAGSNLGNILGVEKTSEQVDA
DTAVVGDQGEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQVVR
ENQVVVVVGETGSGKTTQLTQYLHEDGYTTTGVVGCTQPRRVAAMSVAKRVSEEMETELG
DKVGYAIRFEDVTCSSTIIKYMTDGVLLRETLKDADLDKYRVIVMDEAHERSLNTDVLFG
ILKKVVARRRDFKLIVTSATLNADKFSKFFGGVPVFNIPGRTFPVNILFSKTPCEDYVEA
AVKQAMTIHITSGPGDILIFMTGQEEIEATCYALAERMEQLISSSTKNVPKLSILPIYSQ
LPADLQAKIFQKAEEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQ
VFPCSRAAADQRAGRAGRTGPGTCYRLFTESAYQNEMLPNPVPEIQRTNLGNVVLLLKSL
KVENLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTEIGWKMVEFPLDPTLAKMLLM
GEKLDCLDEVLTVVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYLQWKSN
QYRGDWCNDHFLHVKGLRKAREVRSQLLDILKALKIPLTSCHMEWDVVRKAICSAYFHNS
ARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWL
AELGPMFFSVKDTDTSLLDHKKRQKEEKTAMEEEMEKLRQEQAEAALLEKERERRKRAKQ
QQQISMPGLKKGSTYLRPKKMGL
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgttatatggcccagaagttaatgcagccaacctaagagagaggagcaagcgctgtcta
gttacgcgcgcgggcgagcgagcagccgtgcatctctccctcatttgttttccgattcct
aaacctagcggcggcggcgattccaactccggccggccctctccctccccgtcccctcct
ccagtccggccggccctccccctccgccggtccgcccctcccggactgccccggaccggt
tcggccgctcggggatccagcctccggcctccctgctgccgctgcctgctggcgccctcc
acctccagtcctctcctccacagatgcaccgctgacccctcctctactgaccacggcaca
gctccagtgctccaccaaggaatacccagtagcaaattcctggctccgccactgcccatg
atgagttccgacgggagacttgaccttgacgcgacgacaagcaccctcgggccggaggat
gacacggcgcagggtctgatactgccgaccaaggataaggtcatgtaccggcctccgcca
gggaaatccgcgctaggtttggacctgctcgcacacaagaaaagagaaaaggaagttaac
aattcatttaagcggcctcctgagaaggtagtgacggctgcttcttctatggatgaagat
gagaggccaggatctacagaaaatgatgcaagcagcctgtccggtgttgaccgtggcatc
gtggctcgccgttatcgaggaaccaattccagtgagaaaacatcgtcgaaagaatctaca
gtcactgatgagaatgaaaggggtcttacacccagacatcgagatgaatcccatcggcaa
cagacccccgcctctaggtacgaaccggatgatgacagaagatcccgtgacaaacgtggt
gaacgcgagacatctgcatccattggttatagtagcagtggaaggcgaggataccgtgat
gacagggaatcgaatagtaggcgtaatgaacggagcagatctacatctatcgactacaca
aacaaaagaagtcgggatgactatagctcgagaagctcaagaacacctgcaagatctgac
tgggacagtggccgatgggaatgggaagatacacctcgccgggagtaccgtgatgatcgt
cctggctcccaaagacattatccaacacgatctcctatgctggctgctgcatctcccgat
gcacgtttggtgtctccttggctaggcgggaatacaccccgttccgcagcatccccttgg
gatcatgtttctccctcgcctgctcctgtgagggcttcaggttcatcaaaagggtcttcg
tattcaagttccagtggaagatctcatctgcttaccttttcaaatgatgctgaagctgat
agaagcccctcagctgctgataggaattatgatattaccgaggaaatgatgcaagagatg
gattataatgctgaccgtgcctggtatgattgtgaagaacacaacactgtgttcgatggt
gataattatgctgcagatgatagctcctacaaaaagaaggaagcacaattgcctaagaaa
ttgactcgtaaagatggtagtctgatgaccctttctcagagcaagaaattatcacagatg
actgctgataatgctcagtgggaggacagacaattgttgaggtctggagctgttagagga
acagaggtgcagacagaatttgatgatgaggacgagcgtaaagtaatacttcttgttcat
gatacgaaacctcccttcctggatgggcgagttgtatacacaaagcaagcagagcctgtt
atgccactgaaggatccaacatctgatatggctatcattgcacgaaagggttctgttttg
gttagggaaattcgtgaaaagcagagccagaacaagtcgcggcaacgcttctgggagctt
gctggatctaatcttggaaatatattgggtgttgagaaaacgtctgaacaggttgatgca
gatactgctgttgttggtgatcaaggggagattgatttcaaggaggaagcaaagttttcg
caacacttgaaagaaaaagcagaagctgtcagtgattttgcaaaatctaaatctctttct
cagcaaagacaatatcttcccatatatactgttcgagatgacctgctacaggttgtgcgt
gaaaatcaagtagttgtggtcgttggtgaaactggttctgggaagaccactcaacttact
cagtatctgcatgaggatggatataccacaactggtgttgttggctgtactcaaccgaga
cgtgtggctgccatgagtgttgccaagcgggtcagtgaagaaatggaaaccgaactgggt
gataaagttggatatgctatccgatttgaggacgtcacttgttctagcactataataaag
tatatgacagatggagtgcttcttcgtgaaaccttgaaagatgccgaccttgataaatat
cgtgttatcgtcatggatgaagcacacgaaagatccctcaatactgatgttttgtttggc
atattgaagaaggttgttgcacgccggcgggattttaagctaattgtcacatctgcaacc
ctaaatgcagacaaattctcaaagttctttggaggtgtgcctgtatttaacattccaggc
aggacatttccagttaatatcttgtttagcaaaacaccatgtgaagattatgtggaagcg
gcagtgaagcaggccatgacaattcacataacgagtggccctggcgacatcctcatcttc
atgaccgggcaggaagagatcgaggctacttgctatgctcttgctgagcgcatggagcag
ctaatatcgtcatccacgaagaatgtacccaagctctccatcttgccgatttactcgcag
ttgcctgctgacttgcaggccaagatctttcaaaaggcagaagagggcactcgcaaatgc
attgttgctaccaatattgctgagacgtccctcacagtggatggtatcttctatgtcata
gataccgggtatggaaagatgaaagtatacaatccacggatgggcatggatgcccttcag
gtttttccgtgtagtcgagcagctgcagaccagcgtgcaggacgtgctggaagaactggt
cctggcacatgctacaggctgttcacagaatcagcttaccagaatgagatgctccctaac
cctgtgccagagattcaaaggactaacctgggaaacgtggttctcttactgaagtccctc
aaagtcgaaaacttgcttgattttgacttcatggacccacccccccaggagaatatcctc
aactccatgtaccagctctgggtgttgggcgccttgaacaatgttggtggacttacagaa
ataggttggaagatggtggagttcccattggacccaactctagcaaagatgcttctcatg
ggggagaagctggactgccttgatgaagtattgaccgttgtatccatgctctcagtaccc
tcagttttcttccggccaaaagatcgagcagaggagagcgatgccgcaagggaaaaattc
tttgtcccagagtctgaccacctaacactcctgaatgtatacctgcagtggaagtcaaac
caatatcgaggagactggtgcaatgaccatttcctccatgttaagggtctccgtaaggct
cgggaagtgagatctcaactgctagacatactgaaagccctgaagatcccactgacatca
tgccatatggaatgggacgtggtgaggaaagctatctgctcggcgtacttccataactca
gcaaggttgaagggcataggagagtatgtcaactgccggaacgggatgccgtgccacctg
catcccagcagtgctctctatggtcttgggtacacccctgactatgtggtgtaccacgag
cttgtcctgacaaccaaggagtatatgcagtgtgtgagcgcagtggatccgcagtggctg
gcggagctgggtcctatgttcttctctgtgaaagacacggacacctccctgctggaccac
aagaagagacagaaggaggagaagacagccatggaagaggagatggagaagctgaggcag
gaacaggcggaagcagcactcttggagaaggagagggagcggcggaagagagccaagcag
cagcagcagatctctatgccgggtctgaagaaaggttcgacatatctgaggcccaagaag
atgggtttgtag
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integrated database retrieval system
