Triticum aestivum (bread wheat): 123052735
Help
Entry
123052735 CDS
T07757
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03013
Nucleocytoplasmic transport
taes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123052735
03015 mRNA surveillance pathway
123052735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123052735
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123052735
5.6.2.5 RNA 5'-3' helicase
123052735
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123052735
mRNA cycle factors
Common to processing body (P body) and stress granule
123052735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
nSTAND3
NPHP3_N
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
Hydin_ADK
AAA
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
123052735
NCBI-ProteinID:
XP_044331991
LinkDB
All DBs
Position
2D:complement(267222136..267236953)
Genome browser
AA seq
1266 aa
AA seq
DB search
MATQPPSSAAAADLYETASQPDPSAAGDAYTFLEFNTQGDDFEYPDFPELSQPARSAPPP
PAPVTSSASSSWPAPPLPPDALPDADLAPQDSTPPASSSSPSPRSSASKARAAAAVADGL
AAGVAALSFEEPPGAGTGDDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKWFCNS
RGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAENVVVL
LCREPCLNVNALKDMNWDLSQWTPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINKVEE
LWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKD
SVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGGTSHPAWQSVGHVIKLTAQ
EEVALELRASQGVPVELNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGH
EVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYH
MAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHL
DNSEKSEMHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRLS
NFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFE
RLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPNRPM
FFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNY
MSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRA
RYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLF
LGGGQGVIQGSAFGTVGSVDKRSGRGKGHPFVPFGPPNGAHKPGVHPSGYPLARMPFPPF
PGSPHSQPYAIPTRGSLHGPIGAVPAVPQPVNRNFGAPRANTGGPIGGHLAAHQQNSQQA
MGSVGPTYNFAGDPSSQPSGGGLMSQSGLMAQMPVQGLSQTFRDGFPVGGMSQDFFGDDF
KSQGSHVAYNIAEFSTQASQGGYAVEYTQGPQSGYPGNYLNQSAHPGYPHMGATNDIVSQ
DHMAHGSHGMFTQAGYNDPSQDESSQMHYGMGAPGHLQSQSMMNPMYSQSYAHYNTQPQS
LQPPPQ
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccttcctcggctgcggccgccgacctctacgagacggcctcgcag
cccgacccctccgccgccggggacgcatacaccttcctggagttcaacacgcagggcgac
gacttcgagtaccccgacttcccggagctctcccagcccgcgcgatccgcgccgccgccc
ccggcccccgtcacctcctcagcctcttcttcctggccggctccgcccctgccgcccgac
gctttgccggacgccgatctcgcgccgcaggactcgaccccgccggcctcttcatcctcg
ccgtcgccgcggtcgtcggcgtcgaaggcaagggcggcggcggcggtcgcggacgggctc
gccgcgggggtcgcggcccttagtttcgaggagcctcctggcgccggaacgggggatgac
gggtacgactatggcaagggcgacttcgtggagcatgcctgccggtactgcgggatccac
aaccctgcgtgtgttgcgcgctgcaacgtgccatcctgccgcaagtggttttgcaactcg
cgagggaacacctctggctcccacatcgttaaccacttggtcagagcaaaacataaggaa
gtctgccttcacaaggatagccctctgggagaaacgattcttgaatgctacaattgtggc
tgccggaatgtatttctgcttggttttatctcagcaaaggcagagaatgttgttgttctt
ctgtgtagagagccctgcttgaatgttaatgcgttgaaggatatgaattgggatctcagt
cagtggacacctcttattgatgacaggtgtttcttatcgtggcttgtcaaggttccttca
gaacaggagcagttgagagcacgccaaattagtgcccagcaaattaacaaagtggaagag
ctctggaaaacaaatcctgatgcctctcttgaagatcttgaaaaacctggtgtagatgat
gaaccccagccggtggttttgaagtatgaagatgcttaccagtatcaaaatgtttttgct
ccgctgataaagcttgaggctgattacgacaagatgatgaaagagtcacagagcaaggac
agtgtaactgtgaggtgggacattggactgaacaagaagcgcgttgcctattttgtcttt
ccaaaggaagataatgaattgagacttgtccctggagatgagctacggctgagatattct
ggtggtacttcacaccctgcatggcaatctgtggggcacgtgattaaactcactgcacaa
gaggaggtagcacttgagcttcgtgctagtcagggagtgcctgttgaactgaaccatgga
tttagtgtggattttgtttggaagagtactagctttgataggatgcaaggggcaatgaag
acttttgctgtagatgagacaagtgtcagtgggtacatatatcatcatcttttgggccat
gaagttgagcatcagataatacgcaatacactaccgagacgcttcggtgcgccaggactt
ccagaattaaatgcttcccaggtcttggcagttaaaagtgttctccagaagcccgttagt
ttgattcaaggtccacctggcactgggaaaactgttacctcagctgcaattgtgtaccac
atggcaaaacaaggccaagggcaggtccttgtatgtgcaccaagtaatgttgctgttgat
cagttggcagagaagataagctcaacaggtctcaaggttgttcgactttgtgcgaaatct
agagaagcagtttcttcacctgttgagcatcttacacttcattatcaggttcgacatctc
gataattccgagaagagcgaaatgcataagctacagcaactaaaagacgagcaaggagaa
ttgtcgagcagtgatgagaaaaagtacaaggcactaaaacgagccactgaaagagagata
ttacaaagtgctgatgtgatttgctgcacctgtgttggtgctggagaccctcgtttgtca
aacttccgttttcgccaggttcttatcgatgagtctacacaggcgacagagccagaatgt
cttattccattggttcttggtgttaagcaggttgttcttgttggagatcattgccaactg
ggtccagtcatcatgtgcaaaaaggcagcacgagcaggattagcacaatctctctttgag
cgccttgttatccttggagtcaagccattcaggctacaggtccaatatagaatgcaccct
tgtctttcagaatttccatccaactgtttttatgaaggcacactgcaaaatggggtaacc
gtaaatgagagacagtcatctggaattgactttccttggcctgttccaaatcgaccgatg
ttcttctatgtgcagatgggagtagaagagataagtgctagtgggacatcttacctcaat
aggactgaagctgcaaatgtagagaaaattgtaactacattcttaagaagtggtgttgtg
ccaagccagatcggagttatcacaccttatgaagggcagagggcgtatatagtaaattat
atgtcaaggaatggctctcttcgccaacagctttacaaggaaattgaggtggcaagtgtc
gactccttccagggaagagagaaagattacattattctgtcttgtgttagaagcaatgaa
caccagggtatcggctttcttaatgatccacgcaggttaaatgttgcattaactcgtgct
aggtatggtatagtcgttcttgggaatcctaaagttctaagcaagcagcctctttggaat
agtttgttgacacattacaaggagcatgagtgcttggtagaaggacctttgaacaatttg
aagcagagtatggtgcaatttcaaaaaccaaaaaagatctacaatgatcggagactgttc
ctgggtggtggtcaaggtgttatacagggatctgcctttggcactgtaggctcagtagat
aagagaagtggtaggggaaaaggacacccatttgttccatttgggccaccaaatggggct
cacaaacctggtgtgcacccatcaggctatcctttagctcgcatgccttttcctccattt
cctgggtctccacattctcaaccctacgcaattccaacccggggatccctgcatggaccc
attggagctgttccggcggtgcctcaacctgttaataggaactttggggctcctcgtgca
aataccggtggccctattgggggtcaccttgctgcccatcagcagaactctcagcaagct
atgggaagtgtggggccaacttataactttgctggtgatccgagcagtcagccttctggt
ggaggcctgatgtcccaatctggactgatggcacagatgcctgtccaaggtcttagtcaa
acattccgtgatgggtttcctgttggtgggatgtctcaggacttctttggagatgatttc
aagagccaaggatctcacgtagcatacaacattgcagaattttctactcaggcttctcaa
ggaggttatgctgttgaatatacacaagggccccaatctggatatcctgggaattatttg
aaccaaagtgcacatccaggatacccccatatgggtgcaacaaatgacattgtatctcag
gatcacatggcccatggttcacatggaatgtttacgcaagcgggatacaacgacccatca
caagatgaatcttctcagatgcattatggaatgggtgctcctggccatcttcagtcacag
agcatgatgaatcctatgtactctcagtcatatgctcactataacactcaacctcagtct
cttcagcctccaccgcagtga
DBGET
integrated database retrieval system
