Triticum aestivum (bread wheat): 123054340
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Entry
123054340 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123054340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
taes03041
]
123054340
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123054340
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123054340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_30
AAA_19
SRP54
nSTAND3
T2SSE
nSTAND_NTPase5
Flavi_DEAD
AAA_16
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
123054340
NCBI-ProteinID:
XP_044334028
UniProt:
A0A3B5Y138
LinkDB
All DBs
Position
1A:complement(433615823..433619468)
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AA seq
1060 aa
AA seq
DB search
MASEEGQLKTRVSDRLMALVGYSEVMVVRLVLRLARDSASPADLAARLVDLAGLPSSADT
VAFAEDVHAMFPRKGSRVSEYRKQVQEAAAFARKQSALKLLDDEDDVAKDAGATATASSS
NNSGRKRFRQKAASQGDDDGEEEASVVRDSGRKVRARRGPAEDGGDSGGEELQEMDRDQI
EKAQLDRHIRERDAASTRKLTDRKPSKREQGELARLSEAMDRGDTSELRTASRHAYLEKR
KKMKVEEMRDEIIDNELIFDGVKMTNAEEEEFRRRKEIYELVKDRVGKDADAGDYYRMPE
AYDAAENVDQAKRFAVPRQRYHDPEASAARDGKRSSFFSEQEAWEEQQIRKSRLHFGSGD
GGRAGGGYELVLEDVVDFVKSTVQSGAEPDGEMDELAEAVDAKVKLQRELQDERKNLPVY
KFKDDLLKAIEKYQVLIIVGETGSGKTTQIPQYLHEAGYTAKGKKIACTQPRRVAAMSVA
ARVAQELGVKLGHEVGYSIRFEDCTSDKTVIKYMTDGMLLREFLGEPDLASYSVVIVDEA
HERTLSTDVLFGLVKDIARFRPDVKLLISSATLNAERFSDFFDEAPIFKIPGRRYKVDIH
YTTALEADYIAAAVVTVLQLHVKQPAGDILLFLTGQEEIETVEELLKQKMRTVGSKIAEL
VICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKLKSYNP
RTGMESLRVEPISKASADQRAGRSGRTGPGKCFRLFTEYNFRHDLDDDTVPEIQRSNLAN
VVLRLKALGINDLVGFDFMDPPASEALLKALEELFALGALNSRGELTKTGRRMAEFPLDP
MLSKAIVASEKYGCSEEVVTIAAMLSAGNAVFYRPKDKLVLADTARQAFHAGNVGDHVAL
LNVYSAWRESGYSSQWCRENFVQPRTMKRARDVRDQLEALLERVEIEHCSGAGDLDGIRK
AVTAGYFRNAARRQKDGSYRAVKSRQTVFVHPSSGMADVPPAWVVYHELVLTSKEYMRQV
TELKPEWLLEIAPHYYQRKDIDGHQPKKTGKDKGPAARQT
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgaggagggccagctcaagacgcgggtgtccgaccgtctgatggcgctcgtg
ggctactccgaggtcatggtggtgcgtctggtgctccgcctcgcgcgggacagcgcctcg
ccggccgacctcgcggcgcgcctcgtcgacctcgccggcctcccctcctccgccgacacc
gtcgccttcgcggaggacgtgcacgccatgttcccccgcaagggctcccgcgtcagcgag
taccggaagcaggtgcaggaggcggcggcgttcgccaggaagcagagcgccctcaagctg
ctcgacgatgaggacgatgtcgccaaagacgccggcgccaccgccaccgcgtcgtcctct
aacaacagcggcaggaagcgtttcaggcagaaggccgcgagccaaggggatgacgacggc
gaggaggaggcgagtgtagtgcgcgattcagggcggaaagtgcgagcgcggcgtggaccg
gcggaagacggcggcgactctggtggggaggaactacaggagatggaccgtgaccagatc
gagaaggctcagctcgaccggcacatcagagaacgcgacgcggccagcactaggaaactg
acggaccggaagccgtccaagcgagaacagggcgagctcgcccggctgtccgaagccatg
gacaggggcgacacctcggagctcaggacggcctcgcggcacgcgtacctggagaagcgg
aagaagatgaaggtggaggagatgcgagacgagatcatcgacaacgagctcatcttcgac
ggcgtcaagatgaccaacgccgaagaggaggaattcaggcgcaggaaggaaatctacgag
cttgtcaaggaccgcgtcggaaaggacgccgacgccggcgactactacaggatgccagag
gcatacgacgccgcagaaaacgtggatcaggccaagcggttcgccgttccgaggcagcgg
taccatgaccccgaggcgtcggcggcgagagacggcaagaggagcagtttcttctcggag
caggaggcctgggaagagcagcagataaggaagtctcggctgcactttggatcaggtgat
ggtggccgggccggcggcggctacgagctcgtcttggaagacgtggtcgacttcgtcaag
tcaacggtgcagtccggcgccgagccggacggcgagatggacgaactggccgaggccgtc
gacgccaaggtcaagttacagcgggagctgcaggacgagcggaagaacctacccgtgtac
aagttcaaggacgatctgctcaaggccatcgagaagtaccaggtgctgatcatcgtcgga
gagaccggctccggcaagaccacgcagataccgcagtacctccacgaggccgggtacacg
gccaaggggaagaagatcgcgtgcacgcagccgcggcgcgtggcggccatgagcgtggcg
gcgagggtggcgcaggagctgggcgtcaagctcgggcacgaggtcggctactccatcagg
tttgaggactgcacctcggacaagacggtgatcaagtacatgacggacgggatgctcctg
cgcgagttcctcggcgagccggacctggcgagctacagcgtggtgatcgtggacgaggcg
cacgagcgcacgctctccaccgacgtcctcttcggcctggtaaaggacatcgcgcgcttc
cggccggacgtgaagctgctcatctccagcgcgacgctcaacgccgagaggttcagcgac
ttcttcgacgaggcccccatcttcaagatccccgggaggcggtacaaggtggacatccac
tacaccacggcgctggaggcggactacatcgccgccgccgtcgtcacggtcctgcagctg
cacgtcaagcagcccgccggcgacatcctgctgttcctcacggggcaggaggagatcgag
acggtggaagagctgctgaagcagaagatgaggacggtcggcagcaagattgcggagctg
gtgatctgcccgatctacgcgaacctgcccaccgagctccaggccaagatcttcgagccg
acgccggagggcgcccgcaaggtggttctggcgaccaacatcgccgagacgtcgctgacc
atcgacgggatcaagtacgtgatcgacccgggcttctgcaagctcaagtcgtacaacccg
cgcacgggcatggagtcgctgcgcgtggagcccatctccaaggcgtcggcggaccagcgc
gccggccggtcggggcgcacgggcccgggcaagtgcttccgcctcttcacggagtacaac
ttcaggcatgacctggacgacgacacggtcccggagatccagaggagcaacctggccaac
gtggtgctgcggctcaaggcgctgggcatcaacgacctggtgggcttcgacttcatggac
ccgccggcgtcggaggcgctgctcaaggccctggaggagctcttcgccctcggcgcgctc
aacagccgcggcgagctcaccaagaccgggaggcggatggcggagttccccctggacccc
atgctctccaaggccatcgtggcgtcggagaagtacgggtgctccgaggaggtggtgacc
atcgcggccatgctgtcggccggcaacgccgtcttctaccggcccaaggacaagctggtg
ctcgccgacacggcgcggcaggccttccacgcgggcaacgtcggcgaccatgtggcgctg
ctcaacgtgtacagcgcgtggagggagtcgggctactcgtcgcagtggtgccgcgagaac
ttcgtgcagccgcgcaccatgaagcgcgcgcgggacgtgcgggaccagctggaggcgctg
ctggagcgggtggagatcgagcactgctccggcgccggcgacctcgacgggataaggaag
gcggtcacggcgggatacttccgcaatgccgcgcggcggcagaaggacgggtcgtaccgt
gccgtcaagagccggcagacggtgttcgtgcacccgagctccgggatggcggatgtgccg
ccggcgtgggtggtgtaccacgagctggtgctgaccagcaaggagtacatgcggcaggtg
acggagctcaagccggagtggctgctggagatcgcgccgcactattaccagcgcaaggac
atcgacgggcaccagccgaagaagacgggcaaggacaaaggtccagcggcgaggcaaacc
tga
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