KEGG   Triticum aestivum (bread wheat): 123060984
Entry
123060984         CDS       T07757                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
taes  Triticum aestivum (bread wheat)
Pathway
taes03018  RNA degradation
taes03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:taes00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123060984
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123060984
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:taes03019]
    123060984
   03041 Spliceosome [BR:taes03041]
    123060984
Messenger RNA biogenesis [BR:taes03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123060984
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123060984
Spliceosome [BR:taes03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123060984
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 123060984
NCBI-ProteinID: XP_044339797
LinkDB
Position
3A:complement(207928780..207933084)
AA seq 143 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGDIGTKPGGRGIGRGQDDG
KGGGRGRGGIGSKGGNKGGRGRG
NT seq 432 nt   +upstreamnt  +downstreamnt
atgcttcccctctcgctcctcaagaccgcccaggggcatcccatgctcgtggagctcaag
aacggcgagacctacaatgggcacttggtgaactgcgacacgtggatgaacatccacctc
cgggaggttatttgcacctctaaggatggtgataagttttggaggatgccggagtgctat
attcgtggtaacacgatcaagtatcttcgggttcctgatgaggtgattgacaaggttcaa
gaggaaacttctaagagtagatcagataggaagccaccaggtgttggtcgtggaagagga
agaggagatataggcactaaacctggaggcagaggcattggtcgtggccaagatgatggc
aaaggcggtggccgtggaaggggcggaattggaagtaaaggtggcaacaaaggcggacgt
ggtcgtgggtaa

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