Triticum aestivum (bread wheat): 123061806
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Entry
123061806 CDS
T07757
Name
(RefSeq) uncharacterized protein LOC123061806
KO
K06100
symplekin
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123061806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123061806
03019 Messenger RNA biogenesis [BR:
taes03019
]
123061806
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123061806
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123061806
U7-dependent histone pre-mRNA processing factors
123061806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
123061806
NCBI-ProteinID:
XP_044341014
LinkDB
All DBs
Position
3A:492974733..492990116
Genome browser
AA seq
1288 aa
AA seq
DB search
MEFEADGARWPEQRGGAAEAPPPPQERGEVPSPRFDSSRALRLLTELDSNVTEDLVVLMP
NLLSFLKHDDPAVVKQSIASGTNLFAAVLEEMALQVNECGRVDAWLEEMWAWMNQFKDAV
CVMMREPVPIASKLLAVKFIETWILCLTPQSNSDRMQPIEGKNRRFDASRLAKFHPSLDP
VVLEADANRTFIILVDIVQSAYAHRGSFLVGTINSLAAIGKSRPVYYDRALSVLFGFDPN
LETSKGAHSGSLKYSLKTAFLGFLRSPCQAMLESKDVLVRRLRALSPGEATEQIIRQAEK
MSRNIERACRTNKDEHPTWEMSYGDVNRKNSTGRSSDTLAMAEGMAKRARFDSSAASNPL
VQGIPDYSDMQIENDANMGHSSDPSLLSTDVSPVEKMIEMIGALLAEGERGAESLGILIS
SVESDVMADIVIETMKHLPEAPFPLARNKSVPQPNLQSPSNPSTENLPGNLHSLPFTAQS
VPSADGAGISPPEVLVMPGVSDSKRDPRRDPRRLDPRRTVAPAATSPMQMTVEITSVHQT
NSLSNTLSPLHGKIEKCADYSADPPKNEDEEHPSSKPHQPMDEERSEFLDDSTEPETKFE
VYPPVEAGFPSSDVNEEMNNPLTPEAISNNGSDSTDLEVGPFSPVSKTSTPEDTNHELPL
LPSHLELSDSEKISLHKLAIGRIIDDYKKNSINSRFSLLAHLVAQSTADDNIMDLIQMHI
ILHNHDQKGHELAMHVLYQLQCVNVADAPESSISISEHYEKFFISLAKLLIDVLPASDKS
FSKLLCDAPCLPESLFRFLEGLCMSQGNNQQTKDNEGDRVTQGLGTVWSLILGRPPLRQA
CLDIVLKCAIHSQDEVRGKAVRLVAKKLYDLTYASEKVEQFATDSLLAIANKHGVSTDVN
FTTSKESTSEVEVSNQEASVSGSQISESGSTKTSLISPKQSAISVSEAKRHTSLFFALCT
KRPTLLRQLFNVYGGSPKVVKQCIHWHIPTLVRNLGSSCPEMLDIIHSPPEGSEELVTMI
LQTLTEESNPSANLVVAVKHLYETKLKDASILIPLLSSFPKEEVLPIFPRLVDLSPDRFQ
DALARILQGSAHTGPALTPAEVLIAIHDINPEKDKVPLKKVIDACTACFEQRTVFTQQVL
EKALNKLVDNVPIPLLFMRTVIQALDAFPALVDFVMGILSRLVNKQIWKMPKLWVGFLKL
AYQTQPRSFDVLLQLPPPQLEVALNKYPNLPSHLSSFVNRQNLHNKLPRHTLNILGFLNE
PQQAPMPFAPAALQTADTTSSLPGANIM
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgaggcggacggcgcccggtggccggagcagcgaggcggcgctgccgaggcg
ccgccgccgccgcaggagcgcggcgaggtcccctctccccgcttcgattcgtcgcgtgcc
ctaagattgctgacagagcttgacagtaatgtaacagaagatttggttgtgctgatgcca
aacttgctgtcatttttgaaacatgacgatcctgcagttgttaagcaatctatagctagt
gggacaaatttatttgctgctgtattggaagagatggcacttcaggttaacgagtgtgga
agagttgatgcttggcttgaagagatgtgggcttggatgaaccagttcaaggatgcagta
tgtgttatgatgcgtgagcctgttcctattgcatctaaactacttgctgtaaagttcatt
gaaacatggatcttgtgcctcacacctcaatccaacagtgaccgaatgcagccaatcgaa
ggaaagaatcgtaggtttgatgcttcacgactagctaaatttcacccaagccttgatccc
gttgttctggaagctgatgcaaacaggactttcatcatccttgtggatattgtgcaatca
gcttatgctcatagaggatccttcctagttggcaccattaattctcttgcagctattgga
aagagtaggccggtttactatgaccgtgccctttcagtgttgtttgggtttgaccctaat
ttggagacttcaaaaggagctcattcaggaagcctgaaatattccctgaaaacagctttt
ttagggtttctacgtagtccttgccaggcaatgcttgagtccaaggacgttctagtaagg
cgccttcgagctctgagcccaggtgaagcaacagaacagattattaggcaggcagagaag
atgtctagaaatatagagcgcgcttgtcgtactaacaaggacgagcatccaacatgggag
atgtcgtatggcgatgtgaatcgaaagaattctacaggcagatcaagtgacactcttgct
atggccgagggcatggctaagagagcaagatttgatagctctgcagcttcgaatccccta
gttcagggaatacctgattattctgatatgcagattgaaaatgatgccaatatgggtcat
tcctctgacccatctctcttgagtactgatgtatctcctgttgaaaagatgattgaaatg
ataggtgctttacttgctgaaggggaaagaggagctgaatcccttggtattctcatctca
tcagtagagtcagatgtcatggctgacattgtaattgaaacaatgaagcatctacctgaa
gcgccatttccattagctagaaataagagtgtccctcaaccaaatttgcaatccccctcc
aatccctcgacagagaacttaccaggcaatctgcactctttgcccttcacggcacaatca
gtaccatcggcagatggagcaggcatttcaccacctgaggtccttgtcatgcctggtgtt
tctgattcaaagcgtgacccaagaagagatcctcgtcgccttgatccacggcgaacagtt
gcacctgctgctactagtcccatgcagatgacggtggaaattaccagtgtgcatcagaca
aattctttgtcaaatacactttctcctcttcatgggaagattgaaaagtgtgcagattat
tcagcggacccaccaaaaaatgaagatgaggagcatccatcttcgaagcctcatcagcca
atggacgaagagagatctgagtttttggatgattccacagaaccagagacaaaatttgaa
gtgtacccaccagtggaagccggatttccttcttctgatgtcaatgaagagatgaacaac
cccttgacaccagaagctatttcaaacaacggatctgatagtacggatttggaggtcggt
cccttttcaccagtctccaagacatccacaccagaggatactaatcatgagttgcctctt
cttccatctcatttggaattaagtgacagtgagaaaatctcactgcacaaattagctatt
gggcggataattgatgattacaagaaaaatagcatcaattcaagattttccttgctcgct
catttggttgctcagagtactgctgatgataatattatggatttgattcagatgcacatt
atcttgcataatcatgatcaaaaggggcatgaactggctatgcatgtgttgtatcagctg
cagtgtgtcaatgttgctgatgctccagaaagttctatatctatttctgaacattacgag
aagttctttatatcacttgcaaagttgttgattgacgtgcttcctgcttcagataaatct
ttcagtaaacttctatgtgatgccccatgtttgcctgagtctctgtttagattccttgag
ggtctttgcatgtcacaaggcaacaaccaacaaacaaaggacaatgagggtgaccgtgtc
actcaaggcctgggaacagtatggagtcttattttagggcggcctccactgcggcaagct
tgcttggatattgttctgaagtgtgctattcactctcaagatgaagtcagaggaaaggcg
gttagattggttgcgaaaaagctctatgatctaacatatgcatcagaaaaagttgagcag
tttgccacggacagtcttctggcaattgctaataagcatggtgtgtcgacagatgttaac
ttcacaacctcaaaagaatctacatctgaggttgaagtaagcaaccaggaagcttcagtt
agtggttcccagatttcggaaagtggatctactaagacctctctgatttcacctaaacaa
tcagcaatatcggtatccgaggccaaacgccacacttcattattttttgcactttgcaca
aagagacctactcttcttcgacagctgttcaatgtttatggagggtctccaaaagttgtt
aagcagtgtatccattggcatatacctactcttgtaagaaatctgggatcctcatgtcct
gagatgctggacattatccatagtccacctgaaggcagtgaggaacttgttactatgata
ctgcaaacactgaccgaagaatcaaatccttcagccaacctggtcgtggctgttaaacat
ctatatgagaccaagctgaaggatgcgtctattctcattccattgctatcctcatttccg
aaggaagaggtgctgcctatatttccgagactagttgatctctcacctgacaggttccaa
gacgcacttgctcggatattgcagggatctgctcatactgggccagcgttaacccctgct
gaagttctgattgcaattcatgatattaatccagaaaaggacaaagttcctctaaagaag
gtcatagatgcttgtactgcttgctttgagcagcgcacggtatttactcagcaagttcta
gaaaaggcactaaataaattggtcgacaatgtaccgattcctcttctttttatgagaaca
gttattcaagcactcgatgctttcccagctttggttgattttgtcatggggatactttcc
aggcttgtcaataagcagatctggaaaatgccaaagctgtgggttggcttcttaaaattg
gcataccagacccaaccacgctcttttgatgttttactacagttacctccaccacagctt
gaagttgcattgaataagtacccgaatcttccatcacatctttcttcctttgttaatcgg
cagaacttgcacaacaagttgcccagacatactttgaatattttgggcttccttaacgaa
ccacagcaggcaccaatgccatttgcgcccgctgcattacaaacagcagacacgacttcc
tctcttcctggtgcaaacataatgtga
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