Triticum aestivum (bread wheat): 123078347
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Entry
123078347 CDS
T07757
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03013
Nucleocytoplasmic transport
taes03015
mRNA surveillance pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123078347
09122 Translation
03013 Nucleocytoplasmic transport
123078347
03015 mRNA surveillance pathway
123078347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123078347
03041 Spliceosome [BR:
taes03041
]
123078347
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123078347
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123078347
Spliceosome [BR:
taes03041
]
Complex C
Other components
EJC/TREX
123078347
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123078347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Cas9_PI
Motif
Other DBs
NCBI-GeneID:
123078347
NCBI-ProteinID:
XP_044356760
LinkDB
All DBs
Position
3D:complement(256210517..256218943)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEAKDAEVYEEDLVDYDEEVENAVDGAAANPSVDVVKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICNEFERFSKYLSETKVAVFYGGVHIKKHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHEKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQIVIFVKSVG
RASELNRLLCECNFPAICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagccaaggacgccgaggtgtacgaggaggatctcgtcgactacgacgaggag
gtggagaacgccgtcgacggcgcagccgccaacccttccgtcgacgtcgtcaagaagggt
tacgtgggaatccacagctcagggttcagggacttcctgctcaagccagagctgctccgt
gcgatccaggactgcgggtttgagcatccttccgaagtgcaacatgaatgcatccctcaa
gccattctcggaatggatgtcatctgtcaagcaaaatctgggatgggcaagactgctgtt
tttgtcctctcaactctccagcagattgatccggttgctgggcaagtagctgcacttgtg
ttatgccatacacgagagttagcataccagatttgcaatgaattcgagaggtttagcaag
tacctgtcagaaacaaaagttgctgtcttctatggtggcgttcacataaaaaaacacaag
gatttgttgaagaatgaatgtcctcacattgtggttggcacacctggaaggatcctagct
ctggctagagacaaggacctttcattgaagaatgtgaggcatttcattcttgatgaatgt
gacaagatgcttgattcacttgacatgcgtagagatgtccaggagatcttcaagatgaca
ccccatgagaaacaagtgatgatgttttcagcaacactcagcaaggagattcgcccggtt
tgcaagaaatttatgcaagatcccatggaaatttatgttgatgatgaggctaaactgacc
cttcatggtctagttcagcactatattaaactaagtgaggcggagaagaatcggaaattg
aatgatctcttagatgcgctcgacttcaaccaaattgtgatatttgttaaaagtgttggt
agagcttcagaacttaacaggctgctctgtgaatgcaattttcctgcgatctgcatacat
tcgggaatgacacaggaggagaggttgacccggtataagaacttcaaggaagggcacaag
aggatccttgtggctacggatttggttggcagggggattgatattgagcgtgtcaatatt
gtcataaactatgacatgcctgattctgctgatacatacttgcacagggttggaagggct
gggcgttttggaaccaaagggcttgcaataacatttgttgcttctgcctctgactctgac
gtcctcaatcaggtgcaagaaaggtttgaggtcgacatcaaggagctgcctgagcagatc
gacacttcaacatacatgccatcttga
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