Triticum aestivum (bread wheat): 123078909
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Entry
123078909 CDS
T07757
Name
(RefSeq) uncharacterized protein LOC123078909
KO
K06100
symplekin
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123078909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123078909
03019 Messenger RNA biogenesis [BR:
taes03019
]
123078909
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123078909
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123078909
U7-dependent histone pre-mRNA processing factors
123078909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
123078909
NCBI-ProteinID:
XP_044357494
LinkDB
All DBs
Position
3D:362485057..362500308
Genome browser
AA seq
1293 aa
AA seq
DB search
MEFEADGARWPEQRGGAAEAPPPPQERGEVPSPRFDSSRALRLLTELDSNVTEDLVVLMP
NLLSFLKHDDPAVVKQSIASGTNLFAAVLEEMALQVNECGRVDAWLEEMWAWMNQFKDAV
CVMMREPVPIASKLLAVKFIETWILCLTPQSNSDRMQPIEGKNRRFDASRLAKFHPRLDP
VVLEADANRTFIILVDIVQSAYAHRGSFLVGTINSLAAIGKSRPVYYDRALSVLFGFDPN
LETSKGAHSGSLKYSLKTAFLGFLRSPCQAMLESKEVLVRRLRALSPGEATEQIIRQAEK
MSRNIERACRTNKDEHPTWEMSYGDVNRKNSAGRSSDTLAMAEGMAKRARFDSSAASNPP
VQGIPDYSEMQIENDAVMGHSSDPSLLSTGVSPVEKMIEMIGALLAEGERGAESLGILIS
SVESDVMADIVIETMKHLPEAPFPLARNKSVPQPNLQSPSNPSTENLPGNLHSLPFTAQS
VPSADGAGISPPEVLVMPGVSDSKRDPRRDPRRLDPRRTVAPAATSPMQMTVEITSVHQT
NSLSNTLSPLHGKIEKCADYSADPPKNEDEEHPSSKPHQPMDEERSEFLDDSTEPETKFE
VYPPVEAGFPSSDVNEEMSNPLTPEAISNNGSDSTDLEVGPFSPVSKTSTPEDTNHELPL
LPSHLELSDSEKISLHKLAIGRIIDDYKKNSINSRFSLLAHLVAQSTADDNIMDLIQTHI
ILHNHDQKGHELAMHVLYQLQCVNVADAPESSISTSEHYEKFFISLAKLLIDVLPASDKS
FSKLLCDAPCLPESLFRFLEGLCMSQGNNQQTKDSEGDRVTQGLGTVWSLILGRPPLRQA
CLDIVLKCAIHSQDEVRGKAVRLVAKKLYDLTYASEKVEQFATDSLLAIANKHGVSTDVN
FTTSKESTSEVEVSNQEASVSGSQISDAGPSASGSTKTSLISPKQSAISVSEAKRHTSLF
FALCTKRPTLLRQLFNVYGGSPKVVKQCIHWHIPTLVRNLGSSCPEMLDIIHSPPEGSEE
LVTMILQTLTEESNPSANLVVAVKHLYETKLKDASILIPLLSSFPKEEVLPIFPRLVDLS
PDRFQDALARILQGSAHTGPALTPSEVLIAIHDINPEKDKVPLKKVIDACTACFEQRTVF
TQQVLEKALNKLVDNVPIPLLFMRTVIQALDAFPALVDFVMGILSRLVNKQIWKMPKLWV
GFLKLAYQTQPRSFDVLLQLPPPQLEVALNKYPNLRPHLSSFVNRQNLHNKLPRHTLNIL
GFVNEPQQAPMPFAPAALQTADATSSLPGANIM
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgaggcggacggcgcccggtggccggagcagcgtggcggcgctgccgaggcg
ccgccgccgccgcaggagcgcggcgaggtcccctctccccgcttcgattcgtcgcgtgcc
ctaagattgctgacagagcttgacagtaatgtaacagaagatttggttgtgctgatgcca
aacttgctgtcatttttgaaacatgacgatcctgcagttgttaagcaatctatagctagt
gggacaaatttatttgctgctgtattggaagagatggcacttcaggttaacgagtgtgga
agagttgatgcttggcttgaagagatgtgggcttggatgaaccagttcaaggatgcagta
tgtgttatgatgcgtgagcctgttcctattgcatctaaactactcgctgtaaagttcatt
gaaacatggatcttgtgcctcacacctcaatccaacagtgaccgaatgcagccaatcgaa
ggaaagaatcgtaggtttgatgcttcacgattagctaaatttcaccctagacttgatccc
gttgttctggaagctgatgcaaacaggactttcatcatccttgtggatattgtgcaatca
gcttatgctcatagaggatccttcctagttggcaccattaattctcttgcagctattgga
aagagtaggccggtttactatgaccgtgccctttcagtgttgtttgggtttgaccctaat
ttggagacttcaaaaggagctcattcaggaagcctgaaatattccctgaaaacagctttt
ttagggttcctacgtagtccttgccaggcaatgcttgagtccaaggaagttctagtaagg
cgccttcgagctctgagcccaggtgaagcaacagaacagattattaggcaggcagagaag
atgtctagaaatatagagcgcgcttgtcgtactaacaaggacgagcatccaacatgggag
atgtcgtatggcgatgtgaatcgaaagaattctgcaggcagatcaagtgacactcttgct
atggccgagggcatggctaagagagcaagatttgatagctctgcagcttcgaatccccca
gttcagggaatacctgattattctgagatgcagattgaaaatgatgccgttatgggtcat
tcctctgacccatctctcttgagtactggtgtatctcctgttgagaagatgattgaaatg
ataggtgctttacttgctgaaggggaaagaggagctgaatcccttggtattctcatctca
tcagtagagtcagacgtcatggctgacattgtaattgaaacaatgaagcatctacctgaa
gcaccatttccattagctagaaataagagtgtccctcaaccaaatttgcaatccccctcc
aatccctcgacagagaacttaccaggcaatctgcactctttgcccttcacggcacaatca
gtaccatcggcagatggagcaggcatttcaccacctgaggtccttgtcatgcctggtgtt
tctgattcaaagcgtgacccaagaagagatcctcgccgccttgatccacggcgaacagtt
gcacctgctgctactagtcccatgcagatgacggtggaaattaccagtgtgcatcagaca
aattctttgtcaaatacactttctcctcttcatgggaagattgaaaagtgtgcagattat
tcagcggacccaccaaaaaatgaagatgaggagcatccatcttcgaagcctcatcagcca
atggatgaagagagatctgagtttttggatgattccacagaaccagagacaaaatttgaa
gtgtacccaccggtggaagccggatttccttcttctgatgtcaatgaagagatgagcaat
cccttgacaccagaagctatttcaaacaacggatctgatagtacggatttggaggtcggt
cccttttcaccagtctccaagacatccacaccagaggatactaatcatgagttgccactt
cttccatctcatttggaattaagtgacagtgagaaaatctcactgcacaaattagctatt
gggcggataattgatgattacaagaaaaatagcatcaattcaagattttccttgctcgct
catttggttgctcagagtactgctgatgataatattatggatttgattcagacgcacatt
atcttgcataatcatgatcaaaaggggcatgaactggctatgcatgtgttgtatcagctg
cagtgtgtcaatgttgctgatgctccagaaagttctatatctacttctgaacattacgag
aagttctttatatcacttgcaaagttgttgattgacgtgctacctgcttcagataaatct
ttcagtaaacttctatgtgatgccccatgtttgcctgagtctctgtttagattccttgag
ggtctttgcatgtcacaaggcaacaaccaacaaacaaaggacagtgagggtgaccgtgtc
actcaaggcctgggaacagtatggagtcttattttagggcggcctccattgcggcaagct
tgcttggatattgttctgaagtgtgctattcactctcaagatgaagtcagaggaaaggcg
gttagattggttgcgaaaaagctctatgatctaacatatgcatcagaaaaagttgagcag
tttgccacagacagtcttctggcgattgctaataagcatggtgtgtcgacagatgttaac
ttcacaacctcaaaagaatctacatctgaggttgaagtaagcaaccaggaagcttcagtt
agtggttcccagatttcggatgctggaccttctgcaagtggatctactaagacctctctg
atttcacctaaacaatcagcaatatcggtatccgaggccaaacgccacacttcattattt
tttgcactttgcacaaagagacctactcttcttcgacagctgttcaatgtttacggaggg
tctccaaaagttgttaagcagtgtatccattggcatatacctactcttgtaagaaatctg
ggatcctcatgtcctgagatgctggacattattcatagtccacctgaaggcagtgaggaa
cttgttactatgatactgcaaacactgacagaagaatcaaatccttcagccaacctggtc
gtggctgttaaacatctatatgagaccaagctgaaggatgcgtctattctcattccattg
ctatcctcatttccgaaggaagaggtgctgcctatatttccgagactagttgatctctca
cctgacaggttccaagacgcacttgctcggatattgcagggatctgctcatactgggcca
gcgttaaccccttctgaagttctgattgcaattcatgatattaatccagaaaaggacaaa
gttcctctaaagaaggtcatagatgcttgtactgcttgctttgagcagcgcacggtattt
actcagcaagttctagaaaaggcactaaataaattggtcgacaatgtaccgattcctctt
ctttttatgagaacagttattcaagcactcgatgctttcccagctttggttgattttgtc
atggggatactttccaggcttgtcaataagcagatctggaaaatgccaaagctgtgggtt
gggttcttaaaattggcataccagactcaaccacgctctttcgatgttttattacagtta
cctccaccacagcttgaagttgcattgaataagtacccgaatcttcgaccacatctttct
tcctttgttaatcggcagaacttgcacaacaagttgcccagacatactttgaatattttg
ggcttcgttaacgaaccacagcaggcaccaatgccatttgcgcccgctgcattacaaaca
gcagacgcgacttcctctcttcctggtgcaaacataatgtga
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