Triticum aestivum (bread wheat): 123084885
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Entry
123084885 CDS
T07757
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123084885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123084885
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
123084885
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
123084885
NCBI-ProteinID:
XP_044362353
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Position
4A:complement(24652774..24658595)
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AA seq
661 aa
AA seq
DB search
MDGSKGPSDGDAAEEAGDGNKDRTPGASDAVLAAGPFRTAASDGRAPWAAPGAKPKVVYH
DPSIPRPQDVYLIRVNNCNSPFDHVWLERSEDGTRPIHPLEKLPVEQFIDRNVPESEPVR
PADVDDTPFTLVEDLKGLTELVNKLKDVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFI
IDTLKLRIYIGSYLKELFKDPTKRKVMHGADRDIMWLQRDFRVYVCNLFDTGQASRVLQM
ERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRE
STCENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELAAAQLAVVSALHQWRD
YIAREQDESTGYVLPNKALIEIAKKMPTTTADLRRIVKTKYPCVEDNFDLILDIIWNATE
NSGAFEAIAEQLKKVRLGELDLKSILDTGEVIEMAPSDADNVGISFDPADQYSLAPSSTA
NIRVTSNSRDSFMTDATLTGSIWLHDKTSTIPSSENRTSWGLSGLTRQSNKEVMSNNKQE
TQAPVQELKRPSPFGALVGNSTSGRQTDYFGGFSNEQAKSDVDQIQSSAYYYPQFSDYSS
LAGWSHHEPERTQASGFMSGCYYGHGYQSINQSSTGTGQPAARNNGGGLKKQQQPPPHSG
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacgggtccaagggcccgagcgacggggacgcggcggaggaggcgggggacgggaac
aaggacaggacgcccggcgcctccgacgccgttctcgccgccgggccgttcaggaccgcc
gccagcgacggcagggcgccctgggcggcgccgggggccaagcccaaggtggtctaccac
gatcccagcatcccgcggccgcaggacgtgtacctcatcagggtcaacaactgcaactcg
cccttcgatcacgtctggctggagcgcagcgaggacggcacccgccctatccaccccttg
gaaaaactacccgtggaacagtttattgacagaaatgttcctgaaagtgaaccagtaagg
ccagctgatgtagacgataccccgtttacgctagtagaagacctgaaaggattgacagag
ttagttaacaagttgaaggatgtaaatgaatttgctgtcgatttggagcacaatcaatat
aggtcatttcagggtttgacctgcttgatgcagatttcaacaagaacagaggacttcatt
atcgacacccttaagctacgcatatacatcggttcttacttgaaagaacttttcaaagat
ccaaccaagagaaaggtaatgcatggggcagatcgtgatataatgtggctccagcgggac
ttccgagtatatgtgtgcaatctttttgacacaggacaggcttcaagggttttacagatg
gaacgaaacagcctagaacacctattacatcatttctgtggagtcacagcgaataaaata
tatcaaaatgcagattggaggtcaaggccactctctgatgaaatgatcaagtatgcgaga
gaagatacacattatctgttgtatatatatgacttgatgagacttagactacaaagggag
tccacatgtgaaaacgatcttcttttagaggttcaaaagcgcagtaatgatatttgctta
cagttgtatgaaaaggagctgctgacagataaatcttacctccacatatacgggttgcag
gaacatgaattggccgcagctcagctggctgttgtttctgctctacatcagtggagagat
tatatagctcgtgaacaagatgagagcactggttatgtattgccaaacaaggctttgatt
gagatagcaaagaagatgcctacaaccactgcagatttgcgaagaatcgtgaaaacaaaa
tatccatgtgttgaggataattttgacctaatcttggacatcatatggaatgcaactgaa
aattctggtgcctttgaagcaatagctgagcaactaaagaaagtacgacttggtgagtta
gacttgaaaagtatactggacactggtgaagttatcgaaatggctccttcggatgctgat
aatgttgggatcagttttgatccagctgatcaatattctttagctccttcatcaactgca
aatatcagggttacttctaacagtagggatagttttatgactgatgcaactttgactggt
agcatctggctacacgacaaaacctcaaccataccatcatcagaaaataggacgtcttgg
ggcttatcaggcctgactagacaatcaaacaaggaagtgatgagcaataataagcaggag
acacaggctcctgttcaagaactgaagagaccttcgccttttggagctctggtaggcaat
tcaacatctggaagacagacagattactttggaggattttcaaatgagcaggctaaaagc
gacgttgatcagattcagtcttcagcttattactacccccagttctcagactacagcagt
ttagctggatggagccatcatgaacccgaacgcacacaggcctctgggttcatgtctggt
tgctattacgggcatggctaccagtcgataaaccaaagcagtacaggaacaggtcagccc
gccgctagaaataatggagggggtttgaagaagcagcaacaacctccccctcattcgggt
aactaa
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