Triticum aestivum (bread wheat): 123085691
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Entry
123085691 CDS
T07757
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123085691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
taes03041
]
123085691
03009 Ribosome biogenesis [BR:
taes03009
]
123085691
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123085691
Spliceosome [BR:
taes03041
]
Complex A
U2 snRNP components
U2 related factors
123085691
Complex B
123085691
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123085691
Ribosome biogenesis [BR:
taes03009
]
Eukaryotic type
90S particles
Helicases
123085691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
nSTAND3
SRP54
T2SSE
AAA_30
AAA_7
TrwB_AAD_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
123085691
NCBI-ProteinID:
XP_044363307
LinkDB
All DBs
Position
4A:157025982..157029583
Genome browser
AA seq
719 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAGINGAAAAANPSINRWNGRPYSARYLEILEKRR
TLPVWQQKDEFLRVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYKVI
VLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNMGD
QVGPVKVVPLYSTLPPAMQQKIFDPAPPPLKEGGPAGRKIVVSTNIAETSLTIDGIVYVI
DPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNGDLQPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTS
LGEMMSEFPLDPQMSKMLVISPRYNCSNEILSISAMLSVPNCFLRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDPTWCYENFVNARAMKSADNVRQQLVRIMTRFNLKMCS
TDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYN
EYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRERERAASRN
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgtggttgacgagacctccgta
tccgctaagctcggccgcgccggcatcaatggtgccgccgccgcggccaatccgtccatc
aaccggtggaacggccggccctactcggcgcggtacctagagatcctcgagaagcgccgc
acgctccccgtctggcagcagaaggacgagttcctccgcgtcctccgcgacaaccagacc
ctcatccttgtcggagaaaccggaagtggcaagaccactcagatcccccaatttgtgctc
gaggctgaaggtctgagcaaccgctctatggttgcctgcacccagccgcggagggttgct
gcaatgtcggtctctcggcgtgtcgcggaggagatggatgtcacaatcggggaggaagtt
ggttacagtatccgatttgaagattgcagcagtcacaaaactgttctcaaatatttgaca
gatggtatgcttctgagagaagcaatggcagacccacttttagagaggtacaaggtgatt
gttcttgacgaggctcatgagcgcacgttggcaacggatgttctgtttgggcttctgaag
gaagttctaaagaacaggcctgacttgaagcttgttgttatgagtgctactcttgaggca
gagaagtttcagggttatttcagtggtgcaccattgatgaaggttcctggtagacttcat
cctgttgagatcttctatacacaggaaccagaaagggactatctagaagctgctatcagg
acagttgtgcagatacatatgtgtgaacctgctggtgatatccttgtattccttactgga
gaagaggagattgaggatgcgtgtcggaaaataaacaaggaagttaataacatgggtgat
caggttggcccagttaaagtcgtgccattgtactctactctcccccctgcaatgcagcag
aagatttttgaccctgctccacctccattgaaagagggaggtcctgctggaaggaaaatt
gttgtgtccacaaacattgctgagacatccctaaccatcgatggtatagtgtatgttata
gatccagggttttccaaacagaaggtttacaatccaaggataagggtggaatcccttttg
gtgtctccaatttccaaggcaagtgcgcatcagagagctggtcgtgctggaagaacacag
cctgggaagtgcttcaggttgtacacagagaagagttttaatggtgatttacagcctcag
acctacccagaaattcttcggtcaaacctggcgaatacagttcttactctgaagaagctt
ggaattgatgatttggtgcattttgacttcatggatcctcctgcacccgaaactctaatg
agggccttggaagttctgaactacttgggggcactcgacgatgaaggcaacttaacatct
ttaggtgaaatgatgagtgagttccccttagacccacagatgtcaaagatgcttgtcatc
agtccaaggtacaactgttcaaatgagatcctctcaatatctgccatgctatcagtaccc
aattgctttctccggcctagggaggcacaaaaggctgctgatgaggcgaaggctcgattt
gggcacatcgatggggatcatctgacacttttgaacgtgtaccatgcatacaagcaaaac
aatgaggatcctacatggtgttatgagaattttgtcaatgcccgggcgatgaagtctgct
gataatgttagacaacaacttgtgcgcatcatgaccagattcaacctcaagatgtgcagt
acagacttcaacagtcgtgagtactatgtcaacatcaggaaagcaatgctttcagggtac
tttatgcaggttgctcatctggagcgaactgggcattacttgaccgttaaggataatcag
gttgtccatcttcatccctcgaattgcatggaccataagccggaatgggtcatctacaat
gaatatgttttgaccaccaggaatttcatccgcacagtcaccgatatccgtggagagtgg
ctgatcgatatagctccacagtactatgatctgaccaatttcccatcatgtgaggccaag
cgtgttcttgagaggctacacaataagagggagagggaaagagctgctagtaggaactga
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integrated database retrieval system
