Triticum aestivum (bread wheat): 123091275
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Entry
123091275 CDS
T07757
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123091275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123091275
03041 Spliceosome [BR:
taes03041
]
123091275
03009 Ribosome biogenesis [BR:
taes03009
]
123091275
03016 Transfer RNA biogenesis [BR:
taes03016
]
123091275
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123091275
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123091275
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123091275
Complex C
U4/U6.U5 tri-SnRNP related factors
123091275
Ribosome biogenesis [BR:
taes03009
]
Eukaryotic type
Pre-60S particles
Helicases
123091275
Transfer RNA biogenesis [BR:
taes03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123091275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ArAE_1_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
123091275
NCBI-ProteinID:
XP_044368671
LinkDB
All DBs
Position
4B:complement(99920002..99928444)
Genome browser
AA seq
1003 aa
AA seq
DB search
MEVENTSKRKAPELDLEDSSAAAVLDGQQSLPGSAAKRQNLARSCIHEVAAPNGYDLSMD
EAVHGTLSNPVFNGNMAKTYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIA
MSFRDKQRVIYTSPLKALSNQKYRELSHEFSDVGLMTGDVTLQPNATCLVMTTEILRAML
YRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWI
CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQ
LDGKKNGGPKASGRIAKGGNASGTSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMS
KLDFNTEEEKDSIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPIIKELV
ELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRFIGSGEYIQMSGRAGRR
GKDERGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVI
RNSFHQFQYEKALPEVVQKITRLENEASLLGSSGENDLAEYHKLGLDISELEKKIMSEMI
RPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPSASSSLPPALSASRNNNYIVDTLL
HCSSSSSESGLRSKPCPPRPGEKGEMHVVPVPLPLVCGLSSIRISIPSDLRPPEARQNIL
FAVQELGKRYPQGLPKLHPITDMGIEQPELVDLVHKLEDLEQKLCSHPLHKSDQSEQQLS
WYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDADGVLQLKGRAACLI
DTGDELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMMQLQEAAR
KIAEVQRECKLDLNVEEYVESTCKPYLMDVIYCWSKGATFGEVTEMTDIFEGSIIRLVRR
LDEFLNQLKAAAEAVGEVNLESKFGSASESLRRGIMFANSLYL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggaaaataccagcaagcgtaaagcacccgagctggatttggaggacagttcc
gctgccgctgttctggacggacagcagtcgctgcctggctcggctgccaagcgtcagaac
ctcgcccggtcgtgcatccatgaggttgctgcccccaatggctacgatttgtctatggac
gaggccgtacatgggaccctttcaaaccctgtgtttaacgggaacatggccaagacatac
ccgtttcagctcgaccccttccagagtgtctcgatcgcctgcttggagcggaacgaatct
gtcttggtctcagctcacacctctgcggggaagacagccattgctgagtacgccattgca
atgtcgtttagagacaagcagagggttatatatacctctccactgaaggctctgagcaat
cagaagtaccgtgagcttagtcacgagttttctgatgttggtttgatgactggtgatgtc
acgcttcagccaaatgctacttgcctggtcatgacaacggaaatcctgagggcaatgctc
tataggggttccgaggtgatcaaggaagttggttgggttatatttgatgagatccactac
atgaaggaccgggagagaggcgttgtgtgggaagagagtatagttttccttccacctgcc
atcaagatggtctttctttctgctaccatgtcgaatgcaaccgagtttgctgagtggata
tgcaatctgcacaagcagccttgtcacgtggtgtacacagacttcaggccgacaccgtta
cagcactacgtgttcccaataggtgggtctggtctctacctcgtagtagatgaaaatggt
cagttcagggaggataattttctgaagctgcaagacacatttgcgaagcaacctagtcaa
ctagatgggaagaagaatggtgggcctaaagccagtggtcgaattgcaaaaggcgggaat
gcttctggaacttctgacatatacagaattgtcaagatgattatggagcgcaagtttcaa
ccagtcattattttcagctttagtagaagggaatgtgagcaccatgcgatgtcgatgtca
aaacttgatttcaacactgaagaagaaaaggatagcattgaacaggttttccgtagtgct
attttctgtttaagcgaggaagatagaggtttacctgctatagagttgatgttgcctctt
cttaaacgaggtattgcagtacaccattctggactgcttccaataattaaggagctggtg
gaattgctcttccaagaaggtcttgtgaaagctctctttgctactgagacgtttgccatg
ggactgaacatgcctgcaaaaacagttgtctttacatctgtcaaaaaatgggatggtgat
agtaaccgttttattggttctggagaatatatacagatgagtggaagagctggtcggcgt
gggaaggatgaacgtggcatttgtgttataatgatagatgaaaagatggaaatgagtgtt
atcaaggacatggtgttaggtaaaccagcacctctcatcagtactttccgactgagctac
tacaccattctgaatttgctgagtcgcgcggagggccaatttactgctgaacatgtgatc
cggaattcattccaccagtttcagtatgaaaaggcattacctgaagtggttcagaagatt
acaaggttggaaaatgaagctagcttgctgggctcttcaggagagaatgatcttgctgaa
tatcacaaattagggcttgatatatctgaacttgagaagaaaatcatgtctgagatgatt
agaccagagagagctttgttgtatttggttcctggaaggctggttaaggtgagggatggt
tcaacagactggggatggggtgtggttgtaaatgttgtaaagaaaccttccgcatctagt
agtctcccccctgcattaagtgcatcccgcaataataactatatagtggataccttgctt
cattgctcttctagttcgagtgaaagcggattgcgttcaaagccatgcccacctcgccct
ggggagaagggagaaatgcatgtggtgcctgtaccattacctttagtatgtggtctaagc
agcattagaatcagcattccatctgatctgcgaccacctgaagcaagacaaaacatactt
tttgcagttcaagaactaggaaagcgttacccccaagggcttccaaagctacatccaatt
acggacatgggtattgaacaacctgaattagtcgacctggttcataaacttgaggatctt
gagcagaaactatgttctcacccacttcataagtccgatcaaagtgagcagcaactgtca
tggtaccaaagaaaagctgaactgaatcatgaaatccagcaactaaagtcaaagatgcgg
gattcacagctacaaaaatttagggatgaactgaaaaaccggtctcgtgttctgaagatg
ctgggtcatattgatgcggatggtgttctccagttaaaggggcgtgctgcctgtttgata
gacactggggatgagctgcttatcactgaacttatgtttaatggtacatttaatgatctt
gatcatcatcaagttgcctccgttgttagctgctttgttccgtgtgagaagtcaagtgag
caaatacgcctgagaaatgagctttctaaaccaatgatgcagctccaggaggctgcaaga
aaaatagctgaggtacaacgggaatgcaaattggatctcaatgttgaggaatatgttgaa
tcaacttgtaaaccctacctgatggacgtcatatactgctggtcaaagggcgccaccttc
ggagaggtgacagaaatgactgacatttttgaaggaagcatcatacggctagttaggagg
ctggatgaatttctgaatcagctaaaagccgctgctgaagctgttggggaggttaatctt
gagagcaagtttggatcggcgagtgagagcttacgacgtggcatcatgtttgctaactca
ttgtatctgtga
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