Triticum aestivum (bread wheat): 123094881
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Entry
123094881 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123094881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123094881
03041 Spliceosome [BR:
taes03041
]
123094881
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123094881
Spliceosome [BR:
taes03041
]
Complex B
Other components
Prp19-related factors
123094881
Complex C
123094881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
Mad3_BUB1_I
Suf
TPR_16
PPR
TPR_12
ARM_TT21
ARM_TT21_C
MIT
Motif
Other DBs
NCBI-GeneID:
123094881
NCBI-ProteinID:
XP_044372687
LinkDB
All DBs
Position
4B:complement(402130965..402133451)
Genome browser
AA seq
780 aa
AA seq
DB search
MAAAMEIEVSADDVAYEEDVLRDPFRLSGWLRYLSARRAAPPAKRAAIYERALRALPGSY
KLWHAYLTELGDAARALPVTHAAHAGLDAAFERALAAGMSRMPRVWHMYASSLLHQRLLT
RARHVLDRALRSLPVTQHHHVWPLHLRLASLPDCPAPTAVRVHGRHLQFDPDHEEDFIAF
LVSAGRWRDAAQHLAAAIDDEGFVSVKGTTKRQLLLDLCGLLAQHPEDVAGMPVDGILRG
SIRKFPEEAGVLWTSLASHYARRGLHGKARDVFEEAMTTATTVKDFRMVFDAYLHFEHAM
AAAELELCQADAVDVQDCWLADRDSTDLAMARLERLLERRPELLNSVLLRQNPHDVQAWH
ERAKIFHKDPARHAATYAEAVRTVDPAKATGKPPHTLWLALAKMYEDRGSVGCARDVLHR
ATQANFTAAEHLAAVYCEWAHMELRHQDPERAIDLIRRATTPPSIEPTTHAAAAGGEDVR
VKLHRCLKLWLVYLNLMTTHGSLESTCAVYDKMHDLGVVTPLLVLDHATLLEQHGRFEDA
FRVYERGVRSFKHPHADAIWEAYLTKFVQRHGKSRPERVRDLFQAAVLQAPPQRKKAVYL
RYARFGEDFGLASRAMKVYVDAASAVPASDRLGVYEVYVARATELYGLLKARDVYQQAIV
GGGLPDEGARAMCVGFADLEIVLGEVARARALYAYAAAFTDPKVYPEFWKRRNDFEVLHG
DEGTFREMLRMKRTMAAVARDGAGARGEIRTDAGVVEQGLRPCAGQRFDGAQQCKRIRLV
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccatggagatcgaggtctcggcggacgacgtcgcgtacgaggaggacgtc
ctgcgcgatcccttcaggctgtccggctggctgcgctacctgtcggctcgtcgcgcggcg
ccgccggcgaagcgcgcggccatctacgagcgggcgctgcgcgccctccccgggtcgtac
aagctgtggcacgcctacctcacggagctcggcgacgccgcgcgcgcgctgcccgtcacc
cacgccgctcacgccggcctcgacgccgccttcgagcgcgcgctcgccgctggcatgtcc
cggatgccgcgcgtctggcacatgtacgcctcctcgctcctccaccaacgcctcctcaca
cgcgcccgccacgtgctcgaccgcgcgctgcgctcgctgcccgtcacgcagcaccaccac
gtgtggccgcttcacctccgcctcgcctccctgcccgactgcccggccccgaccgcggtc
cgtgtgcatggccgccacctccagttcgatcctgaccacgaggaggatttcatcgccttc
ctcgtctctgccggcagatggcgggacgcggcccaacacctcgccgcggccatcgacgac
gaaggattcgtgtccgtcaagggcacaacgaagcgccagctactgcttgacctgtgtggc
ctgctcgcccagcacccggaggacgtcgccgggatgccggtggacggaatcctccgcggc
agcatccggaagttccccgaggaggccggcgtgctgtggacaagcctggccagccactac
gcgcggagaggcctccacggcaaggcgagggacgtcttcgaggaggccatgaccacggcg
accaccgtcaaggacttccggatggtgttcgacgcatacttgcacttcgagcacgccatg
gccgccgcggagctcgagctctgccaagcggacgccgtcgacgtccaggactgctggctc
gccgacagggacagcacggacttggcgatggcgaggctggagcggctgctcgaacgccgg
ccggagctgctcaacagcgtcctgctgaggcagaacccgcacgacgtccaggcgtggcac
gaacgggccaagatcttccacaaggatcccgcgagacacgccgcgacctacgcggaggcc
gtcaggactgtcgatccagcgaaggcgacggggaagccgccgcacacgctctggctggcg
ctggccaagatgtacgaggaccgcggcagcgtcggctgcgcccgagacgtcctccacaga
gccacgcaggcaaacttcacggcggcggagcacctcgccgcggtttactgcgagtgggcc
cacatggaactgaggcaccaggatcccgagcgggccatcgacctcatccggcgagcgacc
acgccaccgtctatcgagcccacgacgcacgccgctgctgccggcggcgaggacgttcgg
gtgaaactgcaccggtgtctcaagctgtggctcgtgtacctgaacctgatgacaacacac
gggtcgctcgagtccacctgcgctgtctacgacaagatgcacgacctcggcgtcgtcacg
ccattgctggtgctggaccacgcgaccctactcgagcagcacgggcggttcgaggacgcg
ttccgtgtgtacgagcggggcgtcaggtccttcaagcacccgcacgccgacgccatatgg
gaggcgtacctgaccaagttcgtccagaggcacgggaagagcaggccggagagggtgcgg
gacctgttccaggcggccgtcctgcaggcaccgccgcagaggaagaaggccgtgtacctg
agatacgcgaggttcggggaggacttcggcctcgccagccgcgccatgaaggtgtacgtg
gacgctgcgagcgccgtccccgccagcgacaggctcggcgtctacgaggtgtacgtcgcg
cgggctaccgagctctacggccttctgaaggcgagggacgtgtaccagcaggcgatcgtc
ggcggcgggctgcccgacgagggcgcgagggcgatgtgcgtcgggttcgccgacctcgag
atcgtgctcggcgaagtcgcgcgcgctcgggcgttgtacgcatacgcggcggccttcacg
gatcccaaggtttaccctgagttctggaaacggcggaacgactttgaggtgctacacggc
gacgagggtacgttcagggagatgctccgcatgaagaggaccatggcggccgttgccaga
gacggagcaggggcgcggggtgagatccgcaccgatgccggcgtggtggagcaggggctg
cgcccatgcgccggccaacgtttcgacggtgctcagcaatgcaagcggatacgtctagtg
tag
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