Triticum aestivum (bread wheat): 123096259
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Entry
123096259 CDS
T07757
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123096259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123096259
03041 Spliceosome [BR:
taes03041
]
123096259
03009 Ribosome biogenesis [BR:
taes03009
]
123096259
03016 Transfer RNA biogenesis [BR:
taes03016
]
123096259
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123096259
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123096259
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123096259
Complex C
U4/U6.U5 tri-SnRNP related factors
123096259
Ribosome biogenesis [BR:
taes03009
]
Eukaryotic type
Pre-60S particles
Helicases
123096259
Transfer RNA biogenesis [BR:
taes03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123096259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ArAE_1_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
123096259
NCBI-ProteinID:
XP_044373875
UniProt:
A0A3B6JH19
LinkDB
All DBs
Position
4D:complement(66774086..66781557)
Genome browser
AA seq
1004 aa
AA seq
DB search
MEEVENTSKRKAPELDSEDSSAAAVMNGHQSLPGSAAKRQNLARSCIHEVAAPNGYDLSK
DEAVHGTLSNPVFNGDMAKTYPFQLDPFQTVSIACLERNESVLVSAHTSAGKTAIAEYAI
AMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRGM
LYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEW
ICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPS
QLDGKKSGGPKASGRIAKGGNASGTSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSM
SKLDFNTEEEKDSIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPIIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRFIGSGEYIQMSGRAGR
RGKDERGICVIMIDEQMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHV
IRNSFHQFQYEKALPEVVQKITRLENEASLLGSSGENDLAEYHKLGLDISELEKKIMSEM
IRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASSSLPPALSASRNNNYIVDTL
LHCSSSLSESGLRSKPCPPRPGEKGEMHVVPVPLPLVCGLSSIRISIPSDLRPPEARQNI
LFAVQELGKRYPQGLPKLNPITDMGIEEPELVDLVHKLEDLEQKLCSHPLHKSDQSEQQL
SWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKILGHIDADGVLQLKGRAACL
IDTGDELLVTELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMMQLQEAA
RKIAEVQRECKLDINVEEYVESTCKPYLMDVIYCWSKGATFGEVTEMTDIFEGSIIRLVR
RLDEFLNQLKAAAEAVGEVNLESKFGSASESLRRGIMFANSLYL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtggaaaataccagcaagcgcaaagcacccgagctggattccgaggacagt
tccgctgccgctgttatgaatggacatcagtcgctgcctggctcggctgccaaacgtcag
aacctcgcccggtcgtgcatccatgaggttgctgcccccaatggctatgatttgtctaag
gacgaggccgtacatgggaccctttcaaaccctgtgtttaacggggacatggccaagaca
tacccgtttcagctcgaccccttccagactgtctcgatcgcctgcttggagcggaacgaa
tctgtcttggtctcagctcacacctctgcggggaagacggccattgctgagtacgccatt
gcaatgtcgtttagagacaagcagagggttatatatacctctccactgaaggctctgagc
aatcagaagtaccgtgagcttagccaggagttttctgatgttggcttgatgactggtgat
gtcacgcttcagccaaatgctacttgcctggtcatgacgacggaaatcctgaggggaatg
ctctataggggttccgaggtgatcaaggaagttggttgggttatatttgatgagatccac
tacatgaaggaccgggagagaggcgttgtgtgggaagagagtatagttttcctcccccct
gccatcaagatggtctttctttctgctaccatgtcgaatgcaaccgagtttgctgagtgg
atatgcaatctgcacaagcagccttgtcacgtggtgtacacagacttcaggccgacaccg
ttacagcactacgtgttcccaataggtgggtctggtctctacctcgtagtagatgaaaat
ggtcagttcagggaggataattttctgaagctgcaagacacatttgcgaagcaacctagt
caactagatgggaagaagagtggtgggcctaaagccagtggtcgaattgcaaaaggcggg
aatgcttctggaacttctgacatatacagaattgtcaagatgattatggagcgcaagttt
caaccagtcattattttcagctttagtagaagggaatgtgagcaccatgcgatgtcgatg
tcaaaacttgatttcaacactgaagaagaaaaggatagcattgaacaggttttccgcagt
gctattttctgtttaagcgaggaagatagaggtttacctgctatagagttgatgttgcct
cttcttaaacgaggtattgcagtacaccattctggactgcttccaataattaaggagctg
gtggaattgctcttccaagaaggtcttgtgaaagctctctttgctactgagacgtttgcc
atgggactgaacatgcctgcaaaaacagttgtctttacatctgtcaagaaatgggatggt
gatagtaaccgttttattggttctggagaatatatacagatgagtggaagagccggtcgg
cgtggcaaggatgaacgtggcatttgtgttataatgatagatgaacagatggaaatgagt
gttatcaaggacatggtgttaggtaaaccagcacctctcatcagtactttccgactgagc
tactacactattctgaatttgctgagtcgcgcggagggccaatttactgctgaacatgtg
atccggaattcattccaccagtttcagtatgaaaaggcattacccgaagtggttcagaag
attacaaggttggaaaatgaagctagcttgctgggctcttctggagagaatgatcttgct
gaatatcacaaattagggcttgatatatctgaacttgagaagaaaatcatgtctgagatg
attagaccagagagagctttgttatatttggttcctggaaggctggttaaggtgagggat
ggttcaacagactggggatggggtgtggttgtaaatgttgtaaagaaacctccagcatct
agtagcctcccccctgcattaagtgcatcccgcaataataactatatagtggataccttg
cttcattgttcttctagtttgagtgagagcggattgcgttcaaagccatgcccacctcgc
cctggggagaagggagaaatgcatgtggtgcctgtaccattacctttggtatgtggtcta
agcagcattagaatcagcattccatctgatttgcgaccacctgaagcaagacaaaacata
ctttttgcagttcaagaactaggaaagcgttacccccaaggacttccaaagctaaatcca
attacggacatgggtattgaagaacctgaattagtcgacctggttcataaacttgaggat
cttgagcagaaactgtgttctcacccacttcataagtccgatcaaagtgaacagcaactg
tcatggtaccaaagaaaagctgaattgaatcatgaaattcagcaactaaagtcaaagatg
cgggattcacagctacaaaaatttagggatgaactgaaaaaccggtctcgcgttctgaag
atactgggtcatattgatgcggatggtgttctccagttaaaggggcgtgctgcctgtttg
atagacactggggatgagctgcttgtcactgaacttatgtttaatggtacatttaatgat
cttgatcatcatcaagttgcttccgttgttagctgctttgttccgtgtgagaaatcaagt
gagcaaatacgcctgagaaatgagctttctaagccaatgatgcagctccaggaggctgca
aggaaaatagccgaggtacaacgggaatgcaaattggacatcaatgttgaagaatatgtt
gaatcaacttgtaaaccctacctgatggacgtcatatactgctggtcaaagggcgccacc
ttcggagaggtgacagaaatgactgacatttttgaaggaagcatcatacggctagttagg
aggctggatgaatttctgaatcagctaaaagccgctgctgaagctgttggggaggtcaac
cttgagagcaagtttggatcggcgagtgagagcttacgccgtggcatcatgtttgctaac
tcattgtatctgtga
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