Triticum aestivum (bread wheat): 123096377
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Entry
123096377 CDS
T07757
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
taes
Triticum aestivum (bread wheat)
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
taes03036
]
123096377
Chromosome and associated proteins [BR:
taes03036
]
Eukaryotic type
Meiosis-specific proteins
Others
123096377
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_PDDEXK_dom
SHOC1_2HhH
SHOC1_N
SHOC1_ATPase
SHOC1_HhH_tandem
ZIP2_M
Motif
Other DBs
NCBI-GeneID:
123096377
NCBI-ProteinID:
XP_044374038
UniProt:
A0A3B6JES9
LinkDB
All DBs
Position
4D:85386122..85395285
Genome browser
AA seq
1764 aa
AA seq
DB search
MRTRFLAADYFSPPPPASCSDQALALASLRFPPLPIPSLPPDPHFPLPLPFPAAADLPTV
SISGGDLDSLPISSALSEFLAAVIPQALPVPAIPAADEGLDDFLYDRGGYRKGFSLRESV
AFKIPDGLDEISREKDGKGDGSRSYRLGTSTDTKRWELLKEHIFEVVEVDLPQILEGHVA
SFGGDESGDGGTLLFRVPDAKIQLDFIDIDTEMTLSYPTELADSIYQVEKIPVKHNDEEH
LSARNINFLEIAALDCGVTIPLLEVHRHSWELNGCPTKAEISNIFHNLVEHLSEAQVQHP
ALNSTEFSRSTDMDMLAFVSKDAPCADYQADKPITVKAAVEMDLVRINDNLLLERNSALY
PLKPDGTFSDLPCSVLLEEAQIIDFPSEDVFKMLVQSDAAELNTSDEIFKDDFDPARRFY
ESVVSSELVLVDDTFRSLPTPILSDDDMTLRSMVPSIGEVLCSLKTYSLSAADRIYLDWH
LLLEGPCNREICSTYAIMVEEVKSCHFNSEMQVNCQQTSALGFDFLEYFWGSAKHQDEDK
QNNIYVPTPLPHDPPPAVETAQKYRQESDTEGHGHMEKPSLGKAASLFKSMSQSSDINFY
LNVRSGTKRGTNDENISTLDIPTLNEQAASFPSRSKVDKLIEIHPVNLSDSIRALIKQIH
RSYTTALQESAYLRHTFSDGHLSIPKQKLLGLITGDGSDGFDNHCKHEDKMELIVLYGLK
QVAYYLCFFGLHAGHLYISNLIGSFENIPERLRNIHSFIGEALWKAEKHQIDSHPSLHDI
EMILRSNTHTSQQILIVADTAFWLPLGQKLTSMKMTFVELGKDPAAAYLDPVDKPNPTTW
VLRGLPKSDCILLDNKNIPASFPFNEFGIVLEYGGPDKLSTLLSLAPNLDGFPQLHFLYV
KVDVEDPSVALVEDNPTDQELRATLDTVLHALQKDLQEKMNKMRIVDSLNFIPATNQLQG
RQENLCKYITADSTKILPADDQLLKQENLEKEFVDAHNFVPTAEQRHIEEMLSKRTILHS
QHFVPTVEKSSSTSSVSANVIKAPQDNLSGTDLPSGVKVGRLTPGRLSTPAVVVNTGSHG
KNMLFSRRSSYQQILSLEKGGMQVVERDVDLPVDLILSAAACLVWFETKIFGSNEFTASA
ETSSITNFVEIIATNILMSISFCFCGCIMVFEGEPHPLSAVMESSDSLYAAAASLMMNVQ
IFFSCTPKSTDEIVLSCIRNVNMLNKAPSPDIPESESLAESFFTKFPSINPLSAYSMLSC
GGSLVEFLSWSHECRIQAVEKYLLSPQSISLFNALCKFGELGESRSVMTEGSSVDSDICS
ALLQSPSKRKRCASQVFAVPTSDPLHPDPLNQLPGDYVEHNNVFSQPKLRRFSDTEDAMP
QLPEVFMFDQSLSRGGEGVSCLPRKHGIDAITGNQIMSDHISNGLTADTRHCNRRRANNM
VDTYDFSWQPESGGKEPIKSSFPASEPSFSRSYSHPVFPSALEINDDTGYWDISGGAHDT
WKGHVHGGIASTSCRNDVGSRYHEPTEEIMQKGHVHGGIASTSCRNDVGSRYHEPTEEIM
QKGHVHGDIASTSCRNDVGSRYHEPREEIMHNPGSSLAFLKQDSGFHATPHGSSWEIDYL
RQMNEKRRAREERSRCNTSGMRDGAAKIINPPLIGSFRYQGDGDTPSRNRSPSVGTHHHK
KAREETKAHTHRARKDFKMQPSVSHENRIEPSIYPSWTPIDKRARQKLSFATYGKEKQSK
LVWRDPNSSGAECGFRKRYREEGT
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atgcggactcgcttcctcgccgccgactacttctccccgccgccgccggcctcctgctcg
gaccaagccctagccctagcgtccttgcgcttccctcctctccccatcccctcgcttccg
cccgatccgcatttcccgctccccctccctttccccgccgcggccgacctccccacagtc
agcatctcgggcggcgatctcgactctctccccatatcctccgcgctatctgagttcctc
gcggccgttattccgcaggccctgcctgtgccggctatccccgccgccgacgagggattg
gatgatttcctctacgacaggggcgggtatcgcaagggttttagcttgagggagtctgtt
gcattcaaaatccctgatggattggacgagattagccgcgagaaggatggaaagggagac
ggatccaggtcatatagattggggacctccactgacacgaagagatgggaactgctgaag
gagcacatatttgaggttgtagaggtcgatctcccgcagattttggaaggacacgttgca
tcctttggtggtgacgagtctggtgatggtggcaccttattgtttcgtgttccagatgcg
aaaatccagttggatttcattgatattgacactgagatgacattaagctatccaactgaa
cttgcggattcaatttatcaagtagagaaaatccctgtgaagcataatgacgaggaacat
ttgtctgcaaggaatattaactttttggagattgcagcattagattgtggtgtaacaata
ccactactggaggttcataggcattcttgggagcttaatgggtgtcccactaaggcagag
atatctaatatttttcataaccttgttgaacatttgagtgaagcacaagttcagcatcca
gcgttgaactcaaccgagttctcaagatcaactgatatggacatgttggcctttgtttcc
aaagatgccccatgtgcagactatcaagcagataaaccaataacagttaaggctgcagta
gagatggatcttgtgaggatcaatgataatcttctacttgagagaaactcagcattgtac
cctctcaagcctgatggcaccttttcagatttgccttgctcagttcttttagaagaagca
cagatcattgatttcccttcagaggatgtcttcaaaatgcttgttcagtcagatgcagct
gagctgaatacatctgatgaaatattcaaagacgacttcgatccagcaaggcgtttctat
gaatcagtggttagctctgagttggtgctggttgacgatacattcagatcactacctaca
cctattttatctgatgatgatatgacactgaggtctatggtcccctccataggagaagta
ctttgctccctgaaaacttattcactctctgcagccgacagaatttatttggactggcat
cttttattggaaggtccatgcaaccgggagatatgctctacctatgcaatcatggttgag
gaggtaaaaagttgccacttcaattctgagatgcaagtcaattgtcagcagacatcagca
cttggttttgattttcttgagtatttttggggaagtgcaaaacaccaagatgaggacaag
cagaacaatatttatgtgcctacccctctacctcatgatccacctcctgcagtggaaaca
gctcaaaaatacagacaagaaagtgatactgaaggccacggccacatggaaaagccaagt
ttaggaaaggcagcttcgttattcaagtcaatgtcacaatccagtgacataaatttctac
ttgaacgtcagaagcggcaccaagagaggaactaatgatgaaaatatttctactttagat
atccctactttaaatgaacaagcagcttcttttccaagcaggtctaaagttgacaagctc
atagaaattcatcctgtcaacctttcagattctatccgagcccttatcaaacaaatccat
agaagctatacaactgctttgcaagaaagtgcatatttgaggcatactttctcggatggg
catttaagcattccgaagcagaagcttcttggactgataactggagatggttcagatggc
tttgataatcactgtaaacatgaagataagatggaactcattgtactctatggtttaaaa
caggttgcatattatctatgtttctttggtttgcatgctggccatctgtacataagcaac
ctgattggaagctttgaaaatattcctgagaggttaagaaatattcatagtttcattggt
gaagcactgtggaaagctgagaagcatcagattgactctcacccatcattgcatgacatt
gaaatgatcctgaggtctaatacacacaccagccaacagatccttatagttgccgataca
gctttctggctgccattgggtcaaaaattaacttcgatgaagatgacatttgttgagcta
ggaaaagaccctgctgcagcttatttagatccggtggacaagccaaaccctacaacttgg
gtgctcagaggattgccgaaatcagactgcattctgctagataataagaacattccagct
tcattccctttcaatgagtttggcatcgtactggaatacggaggtccagataaattatct
accttgttgtctctggctcctaatttagatggttttccacaactgcatttcctctatgtc
aaagtggatgttgaagatccttcggttgcacttgttgaggacaaccctactgaccaggag
ttgagagccacactggatacggttttgcatgcacttcagaaagatctgcaagagaagatg
aacaagatgcgtattgttgattcattgaactttataccagcaactaatcagctgcaagga
cggcaggaaaatctctgcaaatatatcactgctgattcaacaaaaatattgcctgcagat
gatcaactgctcaaacaagaaaatttggagaaagagtttgttgatgcacataattttgtt
cctacagctgaacagcggcacatagaggaaatgttgagcaaaagaactatcctccattca
caacattttgtgcctacagttgagaagagcagctctacttcttctgtatctgcaaatgtg
atcaaggccccacaagacaatctatctggtactgacttgccttccggtgtaaaagttggt
cgcctcactccaggaagattatccaccccggcggttgttgtaaatactggaagtcatgga
aagaatatgcttttctctcggagatcatcttatcagcagatactatctttggagaaagga
ggaatgcaggttgtggaacgagacgttgatcttcctgtggacctaatactcagtgctgca
gcttgcctagtatggtttgagacaaaaatctttgggagcaatgaattcacagcatcggca
gagacatctagtataacaaattttgtagagatcattgcgaccaacattctgatgtcaatt
agcttctgtttctgtggttgtataatggtctttgaaggtgaacctcaccccctttctgct
gtaatggagtcatctgattctctatatgctgcagctgctagtctgatgatgaacgtgcag
atattcttctcatgcacacccaagtcaacagatgagatagttcttagttgcattaggaat
gtgaacatgttgaataaagctccttctccagatatacctgaatcagaaagcttggctgaa
tcatttttcacaaaattcccttcaatcaatcccttgtctgcatacagtatgctttcttgt
ggaggcagccttgtggagttcctcagttggtcacatgagtgtcgtatacaggctgttgag
aagtatctcttgtccccgcagagcatttctctgttcaatgctttgtgcaaattcggtgag
ctaggtgaatctaggtctgtgatgactgaaggctcttctgtagattcagacatctgtagt
gcattgttgcagtctccaagtaaaaggaaaaggtgcgcctctcaagtttttgcagtacca
actagtgatcccctccatccggatcctctaaaccaattgcctggtgattatgtagaacat
aacaatgtattctcacagcctaagttgaggaggttctccgacacggaggatgcaatgcct
cagctcccagaggtctttatgttcgatcaaagtttgagtaggggaggtgagggggtctct
tgtctgccaagaaaacacggtattgatgcaataactggcaatcagatcatgagtgatcat
atcagcaatggattgactgcagatacgaggcattgtaaccgaagaagggctaacaatatg
gtggacacatatgacttctcttggcaaccggaatcagggggtaaagaacctatcaaaagc
tcttttccggcaagcgaaccatcattcagcagaagttacagtcatccagtatttccatct
gcattggagatcaatgatgatactggttactgggacatttcaggaggtgcacatgacact
tggaagggtcatgtacatgggggtattgcctcaacctcttgcagaaatgatgtgggcagc
agatatcatgagccaacagaggaaataatgcagaagggtcatgtacatgggggtattgcc
tcaacctcttgcagaaatgatgtgggcagcagatatcatgagccaacagaggaaataatg
cagaagggtcatgtacatggggatattgcctcaacctcttgcagaaatgatgtgggcagc
agatatcatgagccaagagaggaaataatgcataatccaggaagttcgcttgcttttctg
aaacaggattctggctttcatgcgactccacatggctcaagctgggaaattgattatcta
aggcaaatgaacgaaaaaagaagagcacgtgaggagagatcaagatgtaatacatcaggg
atgagggacggggccgctaagattataaatcctccacttattggatccttcagataccaa
ggagatggagatactccttcgaggaaccggagcccatctgtgggaactcaccatcataag
aaagccagagaagaaactaaagcacatacccatagagcaagaaaagatttcaagatgcaa
ccaagtgtaagtcacgaaaacaggatagagccgtccatatatccatcgtggactcccatt
gacaagagagccagacagaaactttcatttgcaacatacgggaaggagaagcaaagcaag
ttggtctggagagacccaaatagctctggtgctgagtgtggcttccggaaaagataccgg
gaagaaggtacgtag
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integrated database retrieval system
