Triticum aestivum (bread wheat): 123097877
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Entry
123097877 CDS
T07757
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03015
mRNA surveillance pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123097877
09123 Folding, sorting and degradation
03018 RNA degradation
123097877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123097877
03041 Spliceosome [BR:
taes03041
]
123097877
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
123097877
mRNA cycle factors
Stress granule specific factors
123097877
Spliceosome [BR:
taes03041
]
Complex C
Other components
Complex C specific factors
123097877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_10
RRM_3
RRM_RdRP1_2
Fin
Motif
Other DBs
NCBI-GeneID:
123097877
NCBI-ProteinID:
XP_044375660
UniProt:
A0A3B6JLW4
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All DBs
Position
4D:complement(353463777..353468690)
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AA seq
653 aa
AA seq
DB search
MAAAPEPVEVPTTEEAPAPAPAASEDQAAPAAAAAGTNATVPALYVGDLHENAQEEHIFD
AFSKVGAVTSVRVCRDNATSRSLRYGYVNYFSQADATTALEQMNHSLILDKPIRVMWSNR
DPDARRSGVGNVFVKNFGDHIDNVILQELFSKFGEILSCKVVRNEDGTSRGYGFVQFAAQ
EPADIAIETLNNSYFEGRELLVAHFIKKSERSANNDDKYTNLYMKNIDDDMTEELIKLKF
SQHGQVTSVKIMKRDDGTSKGFGFVSFKNPESAKKAKEAMNGMALGAKTLYVARAQKKAE
RKQYLQLLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKG
ISKGFGFVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQRFAELATMAG
TASPVIPTGYPHVYFAHPSTHFPQGPSRQGFMYPPIGLGQEWRQNVYPSPHSIQQIHPPL
MPNTPRQYRNNRGCMTGNMMTFPHAVNYVSHAQTAKDFMSMSRQQFGHAKYITPDVMSNG
LAIHHGGPISSVNDSFASLLAAAPPDQQRDMLGNRIYPLVERYHPDLASKITGMLLELDT
SYLLSMLNSQDTLSAKVNECVQALQGQQAAKNKPEDLEALHPGFLDSTGVNAN
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgccggagccggtggaggtgccgacgacggaggaggcgcccgcgcccgcg
cccgcggcgagcgaggatcaggcggcgccggctgcagcggcggcagggaccaacgcgacg
gtgcctgcgctctacgtgggcgatctccatgagaacgcgcaggaggagcacatcttcgat
gccttcagtaaggtcggtgctgtcacctccgtcagggtctgccgcgacaacgccaccagc
aggtcgctccgatatggctacgtaaattacttctcccaagccgatgcaacgactgctttg
gagcagatgaatcatagccttatattggacaagccaattagagtaatgtggtctaaccga
gatcccgatgccaggagaagtggcgttggaaatgtgtttgttaagaactttggcgatcat
attgacaatgtaattcttcaagaactattctccaagtttggagagatattatcttgtaaa
gttgttagaaatgaggatggcacaagtagaggctacggcttcgttcagtttgcagctcaa
gagccagcagacatcgcaatagagactcttaacaactcttactttgagggtagagaattg
cttgtagctcatttcattaagaagagcgaacgatcagccaataatgatgacaaatacact
aacttgtatatgaagaatatagatgatgacatgacagaagaactcattaaattgaagttt
tctcagcatggtcaagtaactagtgtgaagataatgaagagagatgatgggacatccaag
ggttttgggtttgtcagtttcaaaaatccggaaagtgccaagaaagcaaaagaggccatg
aatgggatggctcttggagcgaaaactttgtacgtggcaagggctcagaaaaaggctgaa
agaaagcaatatttgcagctcttacatgaggaaaagcggaatgaaataatcactaagagc
aatgggtccaatgtgtatatcaaaaatattagtgatgaagttgatgatgacactcttcgc
gagcgctttgctgaatttggaaacattacatcagtaaagattatgcgtgatgacaagggc
attagtaaaggatttggatttgtatgttacagcacacccgatgaagcaaagtgtgccgta
agcagcatgcgtggtgtcatgttttacggcaaaccattgtatgttgctattgctcaaagg
aaagaggacagaaaagctaggctggagcaacgttttgctgaacttgctacgatggcagga
actgcaagccctgtgatccccacaggttatcctcatgtgtactttgcccatcctagtaca
cactttcctcagggtccttcaaggcaaggattcatgtatccacccattgggctcggccaa
gaatggaggcagaatgtgtacccttcgccgcatagtatccaacaaattcatccaccactc
atgccaaatactccaaggcagtacagaaacaacaggggatgcatgaccgggaatatgatg
acttttccccacgccgttaattatgtgtcacatgctcagacagctaaagatttcatgtcc
atgtcccggcagcaattcggccatgcaaagtacataacacccgatgttatgagcaatggc
ctggccatccatcacggcggccctatttcatcggtgaacgattctttcgccagcttgctt
gctgctgctccacctgatcaacaaagagatatgctcgggaataggatatatccattggtc
gagagatatcatcctgatctggccagtaagatcactggaatgttgctggagctggatact
tcttatctgctctcgatgctgaattcgcaggataccttgtctgcaaaagttaatgagtgt
gtgcaagctctccaagggcagcaagcggcaaaaaataagcctgaggatctggaggcccta
caccctggcttcctcgactctaccggtgtaaacgccaactga
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