Triticum aestivum (bread wheat): 123101822
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Entry
123101822 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123101822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
taes03041
]
123101822
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123101822
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123101822
Complex C
U4/U6.U5 tri-SnRNP related factors
123101822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
SRP54
T2SSE
nSTAND3
AAA_16
ABC_tran
NB-ARC
Flavi_DEAD
Cas3-like_C_2
TsaE
AAA_23
Motif
Other DBs
NCBI-GeneID:
123101822
NCBI-ProteinID:
XP_044379036
LinkDB
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Position
5A:697554248..697564393
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AA seq
678 aa
AA seq
DB search
MAGGTEHGFGRFEDDSDQETIDAKDILKRELQDERKTLPIYKFRDELLKAVDEYQVIVIV
GETGSGKTTQIPQYLHEAGYTARGKVACTQPRRVAAMSVAARVSQEMGVKLGHEIGYSIR
FEDCTSEKTMIKYMTDGMLLREFLGEPDLAGYSVVMVDEAHERTLSTDILFGLVKDIARF
RPDLKLLISSATLDTEKFSDYFDSAPIFKIPGRRYPVEVHYTKAPEADYIDAAIVTILQI
HVTQPPGDILVFLTGQEEIETVDEILKHKTRGLRTKISELNICPIYANLPTELQAKIFET
TPEGSRKVVLATNIAETSLTIDGIKYVIDPGFCKIKSYNPRTGMESLLINPISKASANQR
AGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLKSLGIHDLVNFDFMD
PPPSEALLKALEQLFALSALNSHGELTKTRRRMAEFPLDPMLSKMIVASEKYKCSDEVMS
IASMLSIGNSIFYRPKDKQVHADNARLNFHTGNIGDHIALLNVYNSWRETDFSTQWCYEN
YIQVRSMKRARDIRDQLEGLMERVEIEVCSNASDLDAIKKAITSGFFHHSARLQKNGSYR
TVKNRQTVFIHPSSGLAQLLPRWVIYHELVLVTKEYMRQVTELKPEWLVEIAPHYYQLKD
VDDAGSKKLPKGQGRAAL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcacggagcacgggttcgggcgatttgaagatgattcagaccaagagacc
atcgatgcaaaagatattctaaaaagggagctccaggatgagcggaaaacccttccaatc
tacaaattcagagatgaactgctcaaggctgttgatgaatatcaggttattgtcatagtg
ggagaaaccggctctggtaaaacgacgcaaatacctcaatatcttcatgaagctggatat
acagcaagaggaaaggttgcttgtacacaacctcgtcgagtggcagccatgagcgttgca
gctagggtgtctcaagagatgggtgttaaattgggacacgagattggttactccataagg
tttgaggattgtacctcagagaaaacaatgattaaatacatgactgatggaatgcttttg
agggagtttcttggagaaccagatttggctggctatagtgttgtcatggttgatgaggct
catgagcgcacgctgtctactgatatcttgtttggtttggttaaggacattgctaggttt
cgtccagacctgaagttgctcatttcaagtgcaacccttgacacagaaaaatttagcgac
tactttgattcagctcctattttcaagattcctgggaggcgataccctgttgaagtacat
tatacaaaagctccagaagcagattacattgatgctgccattgtcactattttacagata
catgtgacacaaccccctggtgatatcctagtgttccttacaggacaggaagaaattgaa
actgttgatgagatcctgaaacacaaaacaaggggtttacgcacaaagatttcagagcta
aatatatgccctatttatgcaaatttgcctactgaacttcaagcaaagatctttgagaca
acccctgagggttctcggaaagtggtcctggccactaatatagcagagacttcattaacc
attgatggtataaaatatgttattgacccaggtttttgcaagatcaagtcatataaccct
cgtacagggatggaatccttgcttatcaatcccatctcaaaggcatcagcaaaccagagg
gcaggaagatctggacggacaggaccaggaaaatgtttccgtctgtacacaagttataac
tacatgcatgatcttgaggacaatactgttccagagatacaaagaaccaaccttgcaaat
gttgttcttacacttaagagtcttggtattcatgacttggttaattttgattttatggac
ccacctccttcagaggccttgttgaaggccctggaacaactttttgctcttagtgcactc
aacagtcatggagagttgaccaagactagaagacgaatggcagagtttccactagatcct
atgctgtcaaagatgatagtagcttcagagaaatataagtgttctgatgaggtcatgtcc
attgcgtcaatgctgtcgatcggcaattctatattctaccgcccgaaggacaaacaggtt
catgcagataatgcaaggttgaacttccacactgggaacattggggaccacatagcatta
ctcaatgtctataactcatggagagaaacagacttctcgactcaatggtgttatgaaaat
tatatccaggtccgcagcatgaagagagcaagagacattcgagatcaactggagggactt
atggagagagttgagattgaggtctgttcaaatgccagtgacttggatgctattaaaaag
gctataacatccggtttcttccaccattctgcacggttgcagaagaatggttcatataga
actgtcaagaaccgtcagacggtctttatccaccctagttcaggattagcacagctactt
cctcgttgggtaatataccacgaactagttctcgtgacaaaagagtacatgcgccaggtg
acggaactgaagcccgaatggctggtggaaattgctccgcactactaccaactaaaagat
gtggacgacgctggttcaaagaagctgcccaagggccaaggacgagctgcattgtag
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