Triticum aestivum (bread wheat): 123105909
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Entry
123105909 CDS
T07757
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
taes04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123105909
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
123105909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
taes03041
]
123105909
04121 Ubiquitin system [BR:
taes04121
]
123105909
03400 DNA repair and recombination proteins [BR:
taes03400
]
123105909
Enzymes [BR:
taes01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123105909
Spliceosome [BR:
taes03041
]
Complex B
Other components
Prp19 complex
123105909
Complex C
Prp19-CDC5 complex
123105909
Ubiquitin system [BR:
taes04121
]
Ubiquitin ligases (E3)
U-box type E3
123105909
DNA repair and recombination proteins [BR:
taes03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
123105909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_EIPR1
PROPPIN
NBCH_WD40
WD40_like
PEP5_VPS11_N
RMC1_N
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_VPS8
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
123105909
NCBI-ProteinID:
XP_044384023
LinkDB
All DBs
Position
5A:675699059..675705225
Genome browser
AA seq
588 aa
AA seq
DB search
MICAISGEVPEDPVLSTNSGLLFERRLIRRYIEVTTVSPALGFASGARPCAWAFFPDFVL
VLVPQDHGKCPVTKEELAMDDLVTVKTNKIPKPRPLQAASVPGLLGMFQNEWDALMLSNF
ALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRTLLAQAERQIPISAAGPAPVAA
VTNGKRGFHHSNMSKPNLFVCSALILFPGYTALEDEVGPDGKKIRPGINPVIIDELTECN
SVLSAQRKKRQVPPSLAPIDALERYTQISSHPLHKTNKPGILSIDIHHSKDIIATGGIDT
NAVLFDRPSGQVLCTLTDHSKKITSLKFVPRDELLITGSADKTVRVWQGNEDGSYGCRHT
MRDHGAEVEAVTVHASQKYFATASRDNTWCFYDISTGSCLTQVGEASGQDAYTSAAFHPD
GLILGTGTSEGVIKIWDVKSQTRVAKFEGEVGHVGTVTAMSFSENGYFLATAALDGVKLW
DLRKLRNFRTLSPYDPDTPTSSVEFDFSGSYIAVAGSDIRVYQVANVKTEWNLVKTLPDL
SGTGKVTSVKFGADAKYVAVGSMDHNLRVFGLPGDEQMEEAKSESAVQ
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgatttgcgcaatctccggcgaggtgccggaggacccggtcctgtcgaccaattcgggg
ctgctcttcgagcggaggctcatccggcgctacatcgaggtcaccaccgtttcccccgct
ctaggtttcgcgtcaggcgcccgtccgtgcgcctgggcctttttccctgattttgttttg
gttttggttccccaggaccacgggaagtgcccggtcaccaaggaggagctcgccatggac
gacctcgtgacggtgaagaccaacaagattcctaagcctagacctctgcaagctgcaagt
gtccctggactccttggtatgtttcagaatgagtgggatgctctcatgctgtctaatttt
gctttggagcagcagctacatacagcaagacaagagctcagtcatgcgttataccagcat
gatgctgcttgccgtgttatcgccagactaaagaaggaaagagatgagtctaggacactt
ttggctcaagctgaaaggcagattcctatttcagctgcaggacctgcgcctgtagctgct
gttacaaatgggaaaagaggttttcaccattctaacatgtcaaaacctaacctttttgtc
tgttctgctctaatcctctttcctggatacacagctttggaagatgaagtgggtcctgat
gggaagaagatacgtcctggtattaatcctgtcatcatcgatgaattaacagaatgcaat
tctgtgctctcagcacagcgcaagaaacggcaggtacctccaagtttagcaccaattgat
gcacttgaaagatatactcagatctccagtcatccacttcacaagacaaacaaaccaggg
attttatctattgatattcatcattcaaaggatattattgctactgggggtatcgataca
aacgcagttcttttcgataggccatcgggtcaagtattgtgcactctcactgatcactca
aagaagattacgagtttgaaatttgttccccgggatgagcttttgataacgggatcagca
gataagactgtccgtgtatggcaaggtaatgaagatggaagctatggttgcaggcacaca
atgagagatcatggtgcagaggttgaagctgtcacggtccatgctagtcagaaatacttt
gcaactgcctccagagataacacatggtgcttttatgatatttcaacagggtcttgcctc
acacaggttggcgaggcttctggacaagatgcatacacgtcagcagctttccacccggat
ggtcttatccttggaacaggcacgtcagaaggtgttatcaaaatttgggatgtaaaatct
cagacaagagttgcaaagtttgaaggggaggttgggcatgttggaacagtgactgctatg
tccttctcagaaaatggatatttcctagcgaccgcggcccttgatggtgtgaagctttgg
gatctacggaagctgagaaattttaggaccctctctccatacgatccagacacaccaaca
agttctgtggagtttgactttagtgggagttatatcgctgttgctggttctgatataagg
gtttaccaagtagccaatgtgaagacggaatggaatcttgtcaagacattaccagattta
tccggcacagggaaagtgacatcggtgaagttcggggcagatgccaagtatgtggccgta
ggttccatggaccacaacctgcgcgtattcgggctccctggagatgaacagatggaggag
gcaaaatcagaatcagcggtgcaatga
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integrated database retrieval system
