Triticum aestivum (bread wheat): 123106093
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Entry
123106093 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123106093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
taes03041
]
123106093
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123106093
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123106093
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
T2SSE
SRP54
PWI
nSTAND_NTPase5
AAA_16
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
123106093
NCBI-ProteinID:
XP_044384236
LinkDB
All DBs
Position
5A:697451881..697462539
Genome browser
AA seq
1046 aa
AA seq
DB search
MASDKQLRDWVSDKLMSIQGFSTSVLVHYVIGLAKDSSSAGDLVGKLVEYGFSSSAETSS
FAADIYAKVPRKGRGISNYQKQEREAAKLVKKQSTYKLLADEDDDEVDNHTTSSASASSK
SRKHFRRKAQDQDDGKDDDETTAHVSERSVRRRTEEVDDEDGDDTLDEEQEIIRDQQEKA
QLEKNMKERDAVKTRKLMERQLSKEEQEELIRRSQALDKNDTSDLRNFSRQAYLLKRRDK
KIDEIRDEILDHEYIFQGVKLTPAEENDFRYKKKIYDLVKDHVESADDVAEYKMPEAYDM
GEGVNQEKRFSVAMQRYKDPEGKDKMNPFAEQEAWEEHQIGKSKLEFGSKDRNRSSNEYQ
FVFDDQIDFVKSSVIEGTQFEDDSDQETIDAKDILKRELQDERKTLPIYKFRDELLKAVD
EYQVIVIVGETGSGKTTQIPQYLHEAGYTARGKVACTQPRRVAAMSVAARVSQEMGVKLG
HEVGYSIRFEDCTSEKTMIKYMTDGMLLREFLGEPDLAGYSVVMVDEAHERTLSTDILFG
LVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEVHYTKAPEADYIDA
AIVTILQIHVTQPPGDILVFLTGQEEIETVDEILKHKTRGLGTKIPELNICPIYANLPTE
LQAKIFETTPEGSRKVVLATNIAETSLTIDGIKYVIDPGFCKIKSYNPRTGMESLLINPI
SKASANQRAGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLKSLGIHD
LVNFDFMDPPPSEALLKALEQLFALSALNSRGELTKTGRRMAEFPLDPMLSKMIVASEKY
KCSDEVMSIASMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVYNSWRETDF
STQWCYENYIQVRSMKRARDIRDQLEGLMERVEIEVCSNASDLDAIKKAITSGFFHHSAR
LQKNGSYRTVKNPQTVFIHPSSGLAQLLPRWVIYHELVLTTKEYMRQVTELKPEWLVEIA
PHYYQLKDVDDAGSKKLPKGQGRAAL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgacaagcagctcagggactgggtctccgacaagctcatgtctatccagggt
ttctcgaccagcgtcctcgtgcactacgtcattggcctagccaaggactcctcttctgct
ggcgatctggtggggaagctcgtggagtacggcttctcctcgtccgccgagacaagcagc
ttcgccgccgacatctacgccaaggtcccccgcaagggcaggggcatcagtaattaccag
aagcaggaaagggaggcagcaaagcttgtgaagaaacaaagcacttacaagttgctggcg
gatgaggatgatgatgaggttgacaaccacacgacgagctcggcgagtgcgtcctctaag
agcaggaagcattttaggaggaaggctcaagaccaagacgatgggaaggatgatgatgaa
acaacagcacatgtttctgagaggagtgtccgaaggagaacagaagaggtggatgatgaa
gacggcgacgacactctggacgaagaacaagaaattataagagatcagcaggaaaaggct
cagctagagaagaacatgaaagaaagagatgcagtgaaaactcgaaagttgatggagcgg
cagttatctaaggaagaacaagaggagcttatcagaagatcacaagcactggataagaat
gacacttcagatctgagaaatttttcaaggcaagcatacttgctaaagcgaagggataaa
aaaattgatgagattcgggacgaaattctcgatcatgaatacatttttcagggtgtgaaa
ctgaccccagctgaagaaaatgacttcagatacaagaagaagatttatgatcttgttaag
gatcatgttgagagtgcagatgatgttgctgagtacaaaatgcctgaagcttatgacatg
ggtgaaggtgttaatcaagaaaagagattctcggtagcaatgcagcgatacaaagatcct
gagggcaaagataaaatgaatccttttgctgaacaggaagcatgggaagaacatcaaata
ggaaagtctaaactggaattcggatcgaaagacagaaatcggtcttctaatgaataccag
tttgtatttgatgatcaaattgattttgttaaatcatcggtcatagaaggaacacagttt
gaagatgattcagaccaagagaccatcgatgcaaaagatattctaaaaagggagctccag
gatgagcggaaaacccttccaatctacaaattcagagatgaactgctcaaggctgttgat
gaatatcaggttattgtcatagtgggagaaaccggctctggtaaaacgacgcaaatacct
caatatcttcatgaagctggatatacagcaagaggaaaggttgcttgtacacaacctcgt
cgagtggcagccatgagcgttgcagctagggtgtctcaagagatgggtgttaaattggga
cacgaggttggttactccataaggtttgaggattgtacctcagagaaaacaatgattaaa
tacatgactgatggaatgcttttgagggagtttcttggagaaccagatttggctggctat
agtgttgtcatggttgatgaggctcatgagcgcacgctgtctactgatatcttgtttggt
ttggttaaggacattgctaggtttcgtccagacctgaagttgctcatttcaagtgcaacc
cttgacgcagaaaaatttagcgactactttgattcagctcctattttcaagattcctggg
aggcgataccctgttgaagtacattatacaaaagctccagaagcagattacattgatgct
gccattgtcactattttacagatacatgtgacacagccccctggtgatatcctagtgttc
cttacaggacaagaagaaattgaaactgttgatgagatcctgaaacacaaaacaaggggt
ttaggcacaaagattccagagctaaatatatgccctatttatgcaaatctgcctactgaa
cttcaagcaaagatctttgagacaacccctgagggttctcggaaagtggtcctggccact
aatatagcagagacttcattaaccattgatggtataaaatatgttattgacccaggtttt
tgcaagatcaagtcatataaccctcgtacagggatggaatccctgcttatcaatcccatc
tcaaaggcatcagcaaaccagagggcaggaagatctggacggacaggaccaggaaaatgt
ttccgtctgtacacaagttataactacatgcatgatcttgaggacaatactgttccagag
atacaaagaaccaaccttgcaaatgttgttcttacacttaagagtcttggtattcatgac
ttggttaattttgattttatggacccacctccttcagaggccttgttgaaggccctggaa
caactttttgctcttagtgcactcaacagtcgtggagagttgaccaagactggaaggcga
atggcagagtttccactagatcctatgctgtcaaagatgatagtagcttcagagaaatat
aagtgttctgatgaggtcatgtccattgcgtcaatgctgtcgatcggcaattctatattc
taccgtccgaaggacaaacaggttcatgcagataatgcaaggttgaacttccacactggg
aacgttggggaccacatagcattactcaatgtctataactcatggagagaaacagacttc
tcgactcaatggtgttatgaaaattatatccaggtccgcagcatgaagagagcaagagac
attcgagatcaactggagggacttatggagagagttgagattgaggtctgttcaaatgcc
agtgacttggatgctattaaaaaggctataacatccggtttcttccaccattctgcacgg
ttgcagaagaatggttcatatagaactgtcaagaaccctcagacggtctttatccaccct
agttcaggattagcacagctacttcctcgttgggtaatataccacgaactagttctcacg
acaaaagagtacatgcgccaggtgacggaactgaagcccgaatggctggtggaaattgct
ccgcactactaccaactaaaagatgtggacgacgctggttcaaagaagctgcccaagggc
caaggacgagctgcattgtag
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integrated database retrieval system
