Triticum aestivum (bread wheat): 123114042
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Entry
123114042 CDS
T07757
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03020
RNA polymerase
taes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123114042
09124 Replication and repair
03420 Nucleotide excision repair
123114042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123114042
03400 DNA repair and recombination proteins [BR:
taes03400
]
123114042
Enzymes [BR:
taes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123114042
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123114042
DNA repair and recombination proteins [BR:
taes03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123114042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF7069
Motif
Other DBs
NCBI-GeneID:
123114042
NCBI-ProteinID:
XP_044391333
LinkDB
All DBs
Position
5B:666539872..666548640
Genome browser
AA seq
1867 aa
AA seq
DB search
MDARFAHSPAEAAKVQLVQFGILSPDEIRQMSVAVIEHAETMEKGKPKPGGLSDPRLGTI
DRRTKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADDDDEK
GNNKFKQALKIKNPKNRLRKIQEACKSKKVCSAGEDDLEGQDTNEPVKKRGGCGAQQPKI
TVDGMKMVAEFKATNKKNGDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLDPKY
ARPDWMILQVLPIPPPPVRPSVMMDTYSRSEDDLTHQLAMIIRHNENLRRQERNGVPAHI
ITEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRVRGNLMGKRVDFS
ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI
IREDGQRLDLRYLKKSSDQHLELGYKVERHLVDGDFVLFNRQPSLHKMSIMGHRIKIMPY
STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ
DTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPTPAILKPKPIWTGKQVFNLIIPKQ
INLIRFSAWHDADAEKESGYITPSDTMVRIEKGELLSGILCKKTLGTSMGSLIHVIWEEV
GPDAARKFLGHTQWLVNYWLLQHGFSIGIGDTIADAGTMKKINDTIADAKTAVNELIKEA
REKKLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFIN
ISQMTACVGQQNVEGKRIPFGFAGRTLPHFSQNDNGPESRGFVQNSYLRGLTPEEFFFHA
MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVW
IEPQKLDSLGMKKAEFDKVFRHELDDENWRPTYMSPEQADDLKTIRDIRIVFEVEIQKLE
ADRLQLGTEIATTGDITWPMPVNLKRLIWNAQKTFKIDLRRPSNMHPMEIVEAMDKLQER
LKVVPGDDAMSIEAQKNATLLFNILLRSTFASKRILKEYRLTRESFEWVIGEIESRFHQS
LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL
SVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTTIEEDVEFVKSYYEM
PDEDIDPDKLSPWLLRIELNREMMVDKRLSMAKIAEKIRHEFDDDLSCIFNDDNADKLIL
RIRIKNDDETPKQDEDDDVFLKKVESNMLTEMALGGIADINKVFIKEKKVNKFDENDGFT
QTKEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD
YLRGVTENIMLGQLAPIGTGGCGLYLNEEMLKQAIELQLPSYVEGLDYGCGMASEHSPIS
GTPYHDGGMMSPVLSPNFRASPVTGAQFSPYVGGMAFSPVPSNYSQSYTSGPPSYSPTSL
SYSPTSPIYSPVSPICSPASTVYSPTSPVYSPTSLSYSPTSPVYSPTSPVYSRTSLAYSP
TSPSYSPTSPLYSPTSPSYSPTLPSSYSPTSPGYSPTSPSYSPTSPNYSLTSPSYSPTSP
NYNLTSPSYNPTSPNYCPASPSYSPTSPNYCPTSPSYSPTSPSYSPTSPNYCPTSVSYSP
TSPNYCPTSPSYSPTSPSYCPRSPSYSPTSPSYSPSHAYSPSSPKMMSPYSEAPPNYSPA
SPTYSPTSPSYAQPSPSYSPTSLHTTSGGPSPDYSPTSPNYSPSASYSPSSSSTGPQTTD
MDDETAT
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcggttcgcgcactcgccggcggaggcggcgaaggtgcagctggtgcagttc
ggcatcctcagccccgacgaaatcaggcaaatgtcggtggccgtgatagagcatgcagag
accatggagaaggggaagcccaagcctggtggtttgagcgaccctcgcctgggcaccatt
gaccggaggaccaagtgcgagacatgcatggccgggatggcagagtgcccgggccacttc
ggccacctcgagctcgcaaagcccatgttccacatcggcttcatcaagaccgtgctctcc
atcatgcgctgcgtctgcttcaactgctccaagatcctcgctgatgacgatgatgagaag
ggtaataacaagttcaagcaggctctgaaaatcaagaacccaaaaaatagattacgaaaa
atacaggaggcttgcaagagcaaaaaggtttgttctgcgggtgaggatgatcttgagggt
caggacaccaatgagccagtgaagaaaagaggtggctgtggtgctcagcagccaaagatc
acagttgatggtatgaagatggttgcagagtttaaagcaacaaacaagaagaatggcgat
caagatcaactccctgaaccagtggagcgaaagcaaattctctctgccgagagggttctt
aatgttctcaagcgtataagtgacgaggattgtcttttgttgggcctggatcctaaatat
gctcgtcctgattggatgatactgcaagtccttccaattcctcctccgcctgtgagacca
tctgtcatgatggacacttactccagaagtgaggatgatttgacccatcaattagcgatg
ataattcggcataatgagaatctgaggaggcaagagagaaatggagtcccagcccacatt
atcacagagtttgctcagttgttgcaatttcacattgcgacatacttcgacaatgatctt
ccaggacaaccaagggccactcagcgttctggaaggcctattaagtcaatctgcagcagg
ctgaaagcaaaagaaggccgggtcagagggaacttaatggggaagcgtgttgatttctca
gctcggaccgtcatcacaccagacccgaatatcaacattgatgaattgggggtgccatgg
agtattgctttgaatctgacatacccagaaactgttactccatataacatcgagaggttg
aaagaactggtagaatatgggcctcaccctcccccaggtaagacaggtgccaagtacatt
atcagggaagatggccagaggctggatcttcgctatctgaagaaaagtagtgatcagcat
ttggagctgggttacaaggtggaaaggcaccttgttgatggagattttgttcttttcaac
cggcagcccagtcttcacaaaatgtctatcatggggcatcgcatcaaaatcatgccctac
tcaactttccgcctcaacttatctgtcacatcaccatacaatgcagattttgatggggat
gaaatgaatatgcatgttccccagtcatttgaaacaagagctgaggttttagagttgatg
atggtgccaaagtgtattgtgtcacctcaagcgaataaacctgttatgggtattgtccag
gacacacttcttggctgtcgaaaaattaccaaaagggatactctcatcgaaaaggatgta
tttatgaacatcttaatgtggtgggaagattttgatgggaaggtccctacccctgccatt
ttgaaaccaaagccgatttggactggcaaacaagttttcaacttgattatccccaagcaa
atcaatttaattagattttcagcctggcatgatgctgatgctgaaaaagaaagcggatat
attactcccagcgatactatggtacggatagagaagggagagcttctgtctggtatactt
tgcaaaaaaacacttgggacatcaatgggaagtcttattcatgttatttgggaagaggta
gggccagatgctgcgcgcaagttcttgggtcatacacagtggctggtcaactactggctt
ctgcaacatggtttcagtatcggaatcggggatacgattgcagatgcaggtacaatgaag
aagattaatgatacaattgcagatgctaagacggctgtgaatgagcttatcaaggaagcg
cgtgagaagaagttggaacctgagccaggacgcacaatgatggaatcatttgaaaataga
gtgaatcaggttcttaacaaggctcgtgatgatgctggtagtagtgctcagaagagtttg
tctgagagcaacaatttgaaagctatggttactgcaggctcaaaaggcagtttcattaat
atttcgcagatgactgcttgcgtcggacagcagaatgttgagggcaagaggatcccattt
ggatttgctggtcgtacattgccccacttctcgcaaaatgacaacggtcccgaaagccgt
ggattcgtgcagaactcttaccttcgaggcctgacaccagaggaattcttcttccatgct
atgggtggtagagaaggtttgatcgatactgctgtaaaaacttctgagactggatatatt
cagcggaggctcgtgaaggccatggaggacatcatggtgaaatatgatggtaccgtgagg
aactccctgggtgatgtcattcagttcttgtatggagaagatggcatggatgctgtttgg
attgaaccgcagaaattggactccctggggatgaaaaaggccgagtttgacaaagtattt
cgtcacgaactggatgatgagaactggaggcccacttacatgtcgcctgaacaagctgat
gatttgaagaccattcgtgatatcagaattgtgtttgaggtagagattcagaaattagaa
gctgacagattacagcttgggactgaaattgccacaactggtgacattacatggcctatg
cctgtcaacctcaagcggcttatctggaatgctcaaaagactttcaagattgatttgaga
agaccttctaacatgcacccgatggaaattgtggaagcaatggataagttgcaagaaaga
ctcaaggttgtcccaggagacgatgccatgagcatcgaggctcagaagaatgctactctg
ctcttcaatatcctgctccgtagcacatttgctagtaagaggatattgaaagaatacagg
ctcacaagggaatctttcgaatgggtcatcggtgagatagaatcgagattccaccagtct
ttggtagctcctggtgagatgattggatgcgtagctgcacagtccattggagaaccagca
actcagatgacgctgaatactttccattatgctggtgttagcgccaagaatgtcaccctt
ggcgtacccaggttaagggagatcattaacgtcgccaagaagataaagaccccgtcgttg
tctgttttcctaaagcctgaggtgagcaagaagaaagaattggccaagaatgtccagtgt
gccttggagtacactacgctacgtagcgtgacccatgccaccgagatatggtatgatcct
gatcctctaggaaccaccattgaagaggatgtggaatttgtcaagtcatattatgaaatg
cctgatgaggatattgacccggataagctgtctccttggctgctgcgtatcgaactgaac
cgtgagatgatggtagataagaggttgagcatggctaaaattgcagagaagatcagacat
gaatttgatgatgacttgtcatgcatattcaatgatgataacgcggataagctcatcctt
cgtatccgcattaaaaatgatgatgaaactccaaaacaggatgaggatgatgatgtcttc
ctcaagaaggttgagagtaacatgttgactgagatggcccttggaggcattgcagatatt
aacaaggtcttcatcaaagagaagaaggtgaataaatttgatgaaaatgatggtttcact
caaacaaaagagtggatgcttgatacagaaggtgtaaacctcttggcagtgatgtgccat
gaggatgttgacgctacaaggacaacgagtaaccatctgatcgaagtgattgaggttctt
gggattgaggctgtccgcaggtctctcttggatgagctgagggtggtgatatcttttgat
gggtcctatgtgaactacaggcatctggccattctctgcgataccatgacatacagaggt
cacctgatggctattactaggcacggtatcaatcgtaatgacacaggacctctcatgaga
tgttcttttgaagaaacagtggatatcttgcttgatgctgctgtgtatgcggagtctgat
tacctgagaggtgtcaccgagaacattatgcttggccagctcgctcctattggtacagga
ggctgtggattgtatctgaatgaggagatgctgaagcaggccattgagcttcaactcccg
agctatgttgaaggtctggactatggctgtggcatggcatcagagcattcacccatctcc
gggacaccgtaccatgatggaggaatgatgtcgccagtgctgagtccaaatttccgggct
tcccccgttacaggtgctcagttctcgccatatgttgggggcatggcattctctcccgtc
ccatcaaactacagccaatcctatacgtctggccctccttcctacagtccgaccagtcta
tcatactcgccaacatcgccaatctatagtccggtatcaccgatctgtagtccggcatcg
acagtttatagtccaacatccccagtttatagcccgacatccctttcatatagcccaaca
tcgccagtttatagtccaacatcgccagtttatagccggacatctcttgcatacagcccc
acgtcaccatcctatagtccaacatcgccactctatagcccaacatcaccatcatacagt
cctacattgccctcatcatacagccctacatcgcctggttacagcccgacgtcaccgagc
tacagccctacttcaccgaactacagcctgacatcaccgagctacagccctacgtcaccg
aactacaacctgacatcaccgagctacaaccctacttcaccgaactactgcccagcgtca
ccgagctacagccctacttcaccgaactactgcccgacatcaccgagctacagcccgaca
tcaccgagctacagccctacttcaccaaactactgcccgacgtcagtgagctacagccct
acttcaccgaactactgcccaacgtcaccgagctacagccctacgtcaccgagctactgc
ccgaggtcaccaagctacagccctacgtcaccctcgtacagtccttcacatgcttattct
ccaagcagcccaaagatgatgagcccgtacagtgaagctcctccaaactacagccctgcc
tcgccgacttactcgcccacctcaccatcatatgcacaaccaagcccatcgtacagcccg
acaagcctgcacactacctctggaggacctagcccagattacagcccaacttcccccaac
tacagccccagcgcaagctactccccatcatcctcatccaccgggccgcaaactactgac
atggatgacgagactgctacttga
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integrated database retrieval system
