Triticum aestivum (bread wheat): 123114298
Help
Entry
123114298 CDS
T07757
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123114298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123114298
03019 Messenger RNA biogenesis [BR:
taes03019
]
123114298
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123114298
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123114298
U7-dependent histone pre-mRNA processing factors
123114298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
123114298
NCBI-ProteinID:
XP_044391661
LinkDB
All DBs
Position
5B:complement(693842633..693845450)
Genome browser
AA seq
711 aa
AA seq
DB search
MTSLATAPAPAASGGREGDEMVITPLGAGSEVGRSCVHLSFKGRTVLVSIPETLAPPSPL
LCSRLSGESDPLRALQFDCGIHPAYPGMASLPFFDEIDPAAVDVLLITHFHLDHAAALPY
FLEKTAFKGRVFMTHATKAIYRLLLSDYIKVSKVSAENMLFDEQDIVSSMEKIEVIDFHQ
TLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSRDRHLKAAEIPQFSPDICIIE
STYGVQRHQPRHVREKRFTDAIHNIVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELH
KIPIYYASPLAKKCMAVYQTYINSMNDRIRNQFARSNPFHFKHIDPLSSIDNFHDVGPSV
VMASPGSLQSGLSRQLFDKWCTDKKNTCVIPGYAVAGSLAKEIITEPRKVQLANGLTAPL
NMQIFYISFSAHADFPQTSGFLGELRPANIILVHGEANEMGRLRQKLITQFEGTDTQIVS
PKNCQPVQLYFSSDKMAKAIGRLAEKVPEVGDSVSGLLVKKGFTYQIMAPEDLRVHTQLS
TTNITQRLAVPYCGSFEVIKYRLRQIYESVESSTDEADVPTLIVHERVTIRLDSESYVTL
QWSSDPISDMVSDSVVAMILNIGREGPKAVPMEEETEMVAQKVVYALMVSVFGDVQVAGE
GKLVITVDGDVAHLDGRSGDVECANAALKGRIETAFHRIQGAVRPIPLSAS
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgacatccctggcgacggcgccggcgccggcggcgtcgggcgggcgggagggcgacgag
atggtgatcacgccgctcggcgcgggcagcgaggtgggccgctcctgcgtccacctgagc
ttcaaggggcgcacagtcctagtaagcatccccgaaaccctagctcccccttctccgctc
ctctgctcccgcctgtccggggaatctgacccactccgtgctctccagttcgactgcggc
atccacccggcgtaccccggcatggcgtcgctgcccttcttcgacgagatcgaccccgcc
gccgtcgacgtcctcctcatcacgcactttcacctggaccacgcggccgcgctgccatac
ttcctggagaagaccgcgttcaagggccgagtcttcatgacccacgccaccaaggccatc
tacaggctgctgctctccgattacatcaaagtcagcaaggtgtccgccgagaacatgctg
tttgacgagcaggatattgtcagctcaatggaaaaaattgaggtcatagacttccaccag
acactggaagttaatggcatacgcttctggtgctatactgctgggcatgtacttggagct
gccatgttcatggtggatattgctggcgttcgcattctttacactggtgactactcccgt
gacaggcacctgaaagctgctgagatcccccagttctcccctgatatttgcattatcgag
tcaacttacggtgtgcagcgacaccaaccccgccatgtcagagagaagcgcttcactgat
gccatccacaacattgtttctcaagggggccgtgttcttatcccagcatttgctcttggt
agagcacaggagctgctgcttatcctagatgagtattggtccaaccacccagagctccat
aagattccaatctattacgcctcccctcttgcgaagaagtgtatggctgtctaccagaca
tacataaactccatgaatgacaggatccgcaaccagtttgcacggtccaatcccttccat
ttcaagcatattgaccctttgagtagcatagacaacttccatgatgttggtccgtcagtg
gtgatggcaagtccaggtagcctccaaagtggcctctccaggcagctctttgacaagtgg
tgcacagataagaagaacacatgtgttattccaggttatgctgttgctggctcccttgca
aaggagatcatcactgagccgagaaaagtgcagctagcaaatgggctcactgctcctctc
aacatgcagatcttctacatctccttttcagctcacgcggatttcccacagacgagcggc
ttcctgggcgagcttcgaccagccaacatcattcttgtacacggggaagcaaatgagatg
gggaggctcagacagaagctgatcactcagttcgagggaacagacacacagatcgtgtct
cccaagaactgccaaccagtgcagctgtatttcagctctgacaagatggccaaggcaatt
ggcagattggcagaaaaggtgccagaagtgggggattctgtcagtggcttgcttgtgaag
aagggcttcacgtaccagattatggctcctgaggacctccgggtgcacacacagctatct
accaccaacattacccagcggctcgctgtcccgtattgtggttcttttgaagtcatcaag
tacagactgaggcaaatatacgagagcgtggaatcatcaaccgacgaagccgatgttcca
acactgattgttcatgagagggtgaccatccgcctggattcagagagctacgtgacgcta
cagtggtcctctgatcccataagcgacatggtgtctgattccgtggtggctatgatcttg
aacatagggcgtgagggaccaaaggccgttccaatggaagaggaaacagagatggtggcg
cagaaggtggtgtacgctctcatggtgtcggtcttcggcgacgttcaagtggcgggggaa
gggaagcttgttataactgtggatggggatgtcgcgcacttggatgggaggagcggtgac
gttgagtgcgcgaacgcagcgctgaaagggaggatcgagaccgcgttccatcgcattcag
ggtgctgtgagaccaatcccgctgtcggcctcctga
DBGET
integrated database retrieval system
