Triticum aestivum (bread wheat): 123119454
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Entry
123119454 CDS
T07757
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123119454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123119454
Enzymes [BR:
taes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123119454
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123119454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Ribosomal_S4e
Motif
Other DBs
NCBI-GeneID:
123119454
NCBI-ProteinID:
XP_044395195
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All DBs
Position
5D:60448368..60453021
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AA seq
597 aa
AA seq
DB search
MAAAASAKQVTRRNFPEALRELAAHVKECDYVAIAAVKTGAPTGWRRALPVDTVETAYLK
AKFASESFQPLHIAVCPFRLGSASGSDVVAYPYNFHLFPRDELQLGMPSYSFSCQSSYFS
SMARDGFDFNMCIYDGISYLSRVQESLARKKTFTPHLQQPSPSASASVADSVFTTRIKSR
IQHWRKGCAEPSKTADGSLVSSLRKLIMGSESYGSRPSMTIDVCSDRQVQLVLETVNGTS
GDLVPLVVPDKGGVPRAVRVIFTSSAEDKNLLLMDIKKLEDEQNLKFRGFREVIDLVASS
EKPIISYNCLNDLTMMHTQFIAPLPPNLHEFMCSSRLVFSSVVDIGHLWREISPLRKAKN
IQAALSYLQRQYFVPMEIEIPLQDGTKGVTKSGENVLRITKLFAKLSKLLKITPKCQSQS
GEQHYTVEDHRNILYPGCMVEESDGVDCTNDNESDTTRTVSTQSVVFLWGFRETSAEELR
SRLARLHHVFSKDFDLRLLDKTCSALIFRSSDAASELLRDISLESPSLNNFFSEGLKAAG
FDVYRKACSSGLWDSDLAEALESASLEPATSTISEHGSSEIYWNSSLKLDLKEYLEC
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgcgtcggcgaagcaggtcaccaggaggaatttcccggaggctctgcgg
gagctggcggctcacgtgaaggagtgcgactacgtggctatcgcggcggtaaagacgggc
gcccccaccgggtggcgacgcgcgctgccggtcgacacggtggagacggcgtacctcaag
gccaaattcgcctccgagtccttccagcctctccacatagccgtctgcccgttccgcctg
ggctctgcctccggctccgacgttgtcgcctacccgtacaatttccacttgtttcccaga
gatgaactacagcttggaatgccttcttatagtttctcctgccaatcatcttacttttca
tcgatggctcgtgatggttttgattttaatatgtgcatttatgatggtatatcttatcta
tcaagggtgcaagaatccttggctaggaaaaagactttcacccctcatcttcagcagcca
tctccatcagcaagtgcatccgttgctgattcagtttttacaactagaattaagtcgaga
attcagcattggcgtaaaggatgtgcagaacccagtaaaacagctgatggatctttagtt
agttctctcaggaaactaatcatgggcagtgaatcatatggttcaaggcccagtatgacc
atcgatgtttgcagtgatcgccaagttcaacttgttttggagacagtaaatggtacctct
ggtgatcttgtacctcttgttgttccggataaaggtggggtgcctagggctgtgcgtgtg
atctttactagttctgcagaggataaaaatcttctcctgatggacatcaaaaaattggaa
gatgagcagaatttgaagtttcgcggatttcgggaagttattgatctagtagcatcttca
gagaaaccaatcatatcatacaattgcttgaatgacctaacaatgatgcacacacaattt
attgcgcctcttccgccgaacctgcatgaatttatgtgttcttcgaggctggttttctct
agtgttgttgatattggccacttgtggcgagaaattagccctttgagaaaagcgaagaat
atacaagcggctctgagttacttacagagacagtactttgtgccaatggaaatagaaata
ccactgcaagatggtaccaagggtgtcacaaaaagtggagaaaatgttctgagaataaca
aaattatttgctaagctaagcaagttacttaaaatcactcccaagtgtcaatctcagtct
ggtgagcagcattacacagttgaagatcaccgtaacattctttatcccggttgcatggtg
gaagaatctgatggtgttgactgcactaatgataatgagtcagataccacaaggacagtg
agcacccagagtgttgttttcttgtggggctttagggagacatctgcagaagagctgaga
tcacgccttgcaagattgcatcatgtcttctcaaaggattttgatctaagattgttggat
aagacatgctcagctttgatatttcgtagttctgatgctgcaagtgaattactaagagac
ataagcttggagagtccctcactaaataatttcttctcagaaggtctgaaagctgcaggt
tttgatgtctacaggaaggcttgcagttcagggctttgggattcagatttagctgaggcc
ctggagagcgcttcattggagccagctacttcaacaatttctgagcatggtagctctgag
atatactggaatagttcattgaagctggatctaaaggagtatctggaatgctag
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