Triticum aestivum (bread wheat): 123123964
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Entry
123123964 CDS
T07757
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123123964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123123964
03019 Messenger RNA biogenesis [BR:
taes03019
]
123123964
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123123964
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123123964
U7-dependent histone pre-mRNA processing factors
123123964
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_3
BrxC_BrxD
DUF3213
Motif
Other DBs
NCBI-GeneID:
123123964
NCBI-ProteinID:
XP_044400563
LinkDB
All DBs
Position
5D:566019559..566023775
Genome browser
AA seq
720 aa
AA seq
DB search
MASCATTPPAGKRPATGGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLVSTPKPYLPP
LLRLAPTDLFLARGWLVQFDCGIHPAYSGMAALPYFDEIDPSAIDVLLVTHFHLDHAASL
PYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDF
HQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQFSPDI
CIIESTYGVQQHQPRHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSNH
PELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQFAQSNPFHFKHIDPLNSIDNFHDV
GPSVVMASPGSLQSGLSRQLFDKWCTDKKNTCVIPGYAVEGSLAKTIINEPREVTLANGL
TAPLNMQIFYISFSAHADFPQTSGFLEELRPPNIILVHGEANEMGRLKQKLITQFDGTNT
KIVSPKNCQSVEMYFSSEKMAKTIGRLAEKVPEVGETVSGLLVKKGFTYQIMAPEDLRVY
TQLSTANITQRIAVPYSGSFEVIKYRLKQIYESVESSTEEDVPVLTVHERVAIRLDSESY
VTLQWSSDPISDMVSDSVVAMILNIGREGPKVVPIEEAVKTEEETEKVARKVVYSLMVSL
FGDVKVAEEGKLVITVDGDVAHLDGRSGDVESENAGLKERIKTAFRRIQGAVRPIPLSAS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcatcctgcgcgacgacgccgccggcggggaagcggccggcgacgggcgggcgggag
ggcgaccagatggtgatcaccccgctcggcgccggcagcgaggtcggccgctcctgcgtc
cacatgacgttcaaggggcgcacagtcctcgtaagcacccccaaaccctacctccctccc
cttctccgattagctccgactgacttgttccttgctcgtggttggttggtccagttcgac
tgcggcatccaccccgcgtactccggcatggcggctctcccatatttcgacgagatcgac
ccctccgccatcgacgtcctgctcgtcacccacttccacctggaccacgccgcctcgctg
ccatacttcctggagaagacgacgttcaagggccgcgtgttcatgacccacgccaccaag
gccatctacaggctgctgctctcggattatgtcaaggtcagcaaagtgtctgtggaggac
atgctcttcgatgagcaggacataatccggtccatggacaaaatcgaggtcatagacttc
caccagacactggaagttaatggcatacgcttctggtgctatactgctggccatgtactt
ggtgctgccatgttcatggtggatattgctggtgtacgcattctttacactggtgactac
tcccgtgaagaagaccgtcacctcaaagctgctgagataccccagttctcccctgatatt
tgcattatcgagtcaacttacggtgtgcagcaacaccaaccccgccatgtcagagagaag
cgcttcactgatgccatccacaacacagtttctcaagggggccgtgttcttatcccagca
ttcgctcttggtagagcacaggaactgttgcttatcctggatgagtattggtctaaccac
ccagagctccataagattccaatctattatgcctcccctcttgcgaagaagtgtatggct
gtctaccagacatacataaactccatgaatgaaaggataaggaatcagtttgcacagtcc
aatccgttccatttcaagcatattgaccctttgaatagcattgacaacttccatgatgtg
ggtccgtcagtggtgatggcaagtccaggtagcctccaaagtggcctctccaggcagctc
tttgacaagtggtgcacagataagaagaacacatgtgttattccaggttatgctgtggaa
ggctcgcttgcaaagaccatcatcaacgaaccgagagaagtgacactagcaaatgggctc
actgctcctcttaatatgcagatcttctacatctccttctcagctcacgctgattttcca
cagacgagcggcttcttggaagagcttcgcccacccaacattattcttgtccacggagaa
gcaaatgagatgggtaggcttaagcagaaacttatcacccagtttgatgggacaaacaca
aaaattgtgtctcccaagaactgccaatcggtcgagatgtatttcagctctgagaaaatg
gccaagacaattggcagactggcagagaaggtaccggaagtgggcgaaacagtcagcggc
ttgcttgtgaagaaggggttcacatatcagattatggcccctgaggacctccgtgtgtac
acgcagctgtctactgccaacattactcagcggatagctgtcccgtattctggttctttt
gaggtgatcaagtacagactgaagcaaatatatgagagcgtggaatcatcaaccgaagaa
gatgttccagtactgactgttcacgagagggtggccatccgcctggattcagagagctac
gtgacgctgcagtggtcgtccgatcccataagcgacatggtgtccgactcggtggtggcc
atgatcttgaacattggccgtgagggtccaaaggttgttccgatcgaagaagcggtgaag
acggaagaagaaacagagaaggtggcgcggaaggtggtgtactctctgatggtatcactc
ttcggcgacgttaaagttgcagaggaagggaagcttgttataactgtggatggagacgtc
gcgcacttggatggcaggagcggtgatgttgagtccgagaacgctgggctgaaagagagg
atcaagaccgcgttccggcgcatacagggtgcggtgagaccgatcccgctttcagcctcc
tga
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