Triticum aestivum (bread wheat): 123128239
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Entry
123128239 CDS
T07757
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123128239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123128239
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123128239
mRNA degradation factors
5'-3' decay
Decapping complex
123128239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
DUF445
Motif
Other DBs
NCBI-GeneID:
123128239
NCBI-ProteinID:
XP_044404131
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All DBs
Position
6A:complement(520149208..520157322)
Genome browser
AA seq
1281 aa
AA seq
DB search
MPRPVIPFPMPNPNANPNPGANPMAAGGANPGARLMQLLGSSGSGHLESAVSMPPPSSEF
AAAQPSPLPAMPSAPPARMLSSTSSKVPRGRLLGGGDKAVHNVDSRLPGEAQPPQLEVTP
ITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSLLRGHTQRVTDMAFFAE
DVHRLASASVDGRIYVWRIDEGPDAENKPQITGKIEVAIQIVGDAVAYHPRICWHSHKQE
LLFVGIRNCVLRIDTTKVGRGRDFSVEEPIKCHLDELIDGVRLVGRHDGDVTDLSISQWM
TTRLASGSNDGMVKIWDDRKLAPLSILKPHDGQAVYSVAFLTAPERPHHINLITAGPLNR
EIKIWASTNEEGWLLPSDSETWNCTQTLELVSSLEPKVEEAFFNQVAVLPQASIILLANA
KKNAIYAVHVEYGSDPASTRLDYIADFTVAMPILSLTGTHESQPDGEQVVQVYCVQTMAI
QQYGLELSLCSPPTSDTTSFGRDPAISRVYDTPLEVVGAESSTGTSFTDSYTVGTSSKQS
TFDQTAEFDLKPSAPPLTYTEGDGSAHLQSAPLASNTDLTGSGPSVGNRDKDQSAFDYST
SRITEPVALTRQDTPMPKPVALARQDTPMPKPVALARQDTPMPKDNFGKDELRDSHSDVQ
MLPNPRMMFKVGGNATHLITPSEIISGALSAESNQISKSDGAKIQDDSISSPRIAEVEAK
HVDESKSNHDLELEAVKEAQVVCENSEKDQNSLEQTVEMISERSVTTDKYSVEESRSPSD
RLVPDHTGAAGENVSNKTVEKPGISDSSVSREQSSSYTKDKVFHPQASGQSSPSTSAFNS
TESSHEPVSSAYPPIQSSSEVADMLQQLIAMQKDMQKQLGTIVIAPIAKEGKRIETSLGR
TMEKSIKASIDALWARFLEENTKREKAERERMQQMTTLITSSINKDLPAMLDKLVKKEVS
SLGPVVARAMTPIIEKSLTSIVADAVQKAVGDKVVNQLDKSVTAKLEATLARQIQMQFHT
SVKQTLQDVLRTSFESLLVPAFEQSCKTMFEQVDSAFQKGMSEHAVAIQQQVEAAHTPLV
LTLKETITSASSITQNLTSELLDGNRKILALVTSGNANAQNTNVLQPNNGPITGPPEVEA
PLDPMKELGRLLAEHKFDEAFTVALQRSDVSIVSWLCSQVDLRGLCTMAPVPLNQGVLLA
LLQQLAVDIGTETSRKIQWMTDVAMAINPTDQVIAIHVRPIFEQVYAKLAHHRSLPTTSP
LDNSNLRLLMHVINSVLLSYK
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcccggtcatccccttccccatgcccaacccgaacgcgaaccccaacccgggc
gctaaccccatggccgccgggggcgccaaccccggcgctcgcctcatgcagctgctcggc
agctccgggtcgggccacctcgagtccgcggtatctatgcccccgccgtcgtcggagttc
gccgccgcgcagccgtcgccgctcccggcgatgccatccgcgccgccggcgaggatgctc
agcagcaccagcagcaaggtgccgagaggtcggcttctgggtggcggggacaaggcggtg
cacaacgtcgactcgaggctgcctggggaggcgcagccgccacagctggaggtgacgccg
atcaccaagtacacgtcagacccaggtcttgtgctgggcaggcagatcgctgtaaaccgg
acgtacatcgtctatgggctcaagctggggaacatccgtgtgctaaacatcaacaccgcg
cttcggtcactgctccgtggccatacacagagggtcacggacatggctttcttcgctgag
gacgtccatcgtttagcaagcgcaagtgtggatggacggatatacgtgtggaggattgat
gaggggcccgatgcagaaaataaaccacaaattacaggaaagatagaagttgccatacaa
attgtaggtgatgctgtagcttaccatccaaggatatgttggcactctcataagcaagaa
cttctgtttgttggaatcagaaactgtgtcttaagaatagacacaactaaagttggaagg
ggaagagactttagtgttgaagaacctatcaaatgtcatcttgatgagcttattgatggt
gtacgcttggttggtaggcatgatggtgatgtgacagatttgtccatatctcagtggatg
actacccgactggcttcaggatcaaatgatggcatggtaaagatttgggacgatcgcaag
ttagcacctctatcgattctaaagccacatgatggtcaagctgtttactcagttgccttt
cttacagcacctgagcgcccgcatcatataaatctcatcactgctggtcctctaaaccga
gaaattaaaatttgggcttctactaatgaagaaggttggttgttgccaagcgactctgag
acttggaattgcacgcagactctggaacttgttagttctctggaacctaaagtcgaggag
gcatttttcaaccaagtcgcagtgctgcctcaagcaagcattatcttacttgcgaatgcg
aagaagaatgctatttacgctgtgcatgttgagtatggctcagaccccgcttctacccgc
ttggattatatcgcagattttacagtcgcgatgcctattttaagtcttactggcacacat
gaaagccaacctgatggtgagcaggtagttcaagtctattgtgtccaaacaatggccatc
cagcagtatgggctggagttatcactttgttcgcctcctacatctgacactacctcattt
ggaagagaccctgctatttcacgtgtttatgatacacctctggaagtggtaggagcagag
tcatccacgggaactagctttacagattcttataccgtcggtacttcgagtaaacaatca
acttttgatcagactgcagagtttgatcttaagccatcagctccaccacttacatacaca
gaaggtgatggttctgcgcatcttcagtctgcccctcttgcatcaaacactgatcttact
ggatcaggaccatcagtaggcaaccgtgacaaagaccaatcagcttttgattattcgaca
agccgaatcactgagccagttgccttgactaggcaagatacacccatgccaaaaccagtt
gccctcgctaggcaagatacacccatgccaaaaccagttgcccttgctaggcaagataca
cccatgccaaaggacaattttggaaaggatgaattaagagacagccacagtgatgttcag
atgctcccaaatcctcgcatgatgtttaaggtaggaggaaatgccactcatctcataact
ccatctgaaattatatcaggtgctctgtctgctgaaagcaatcagatctctaaatctgat
ggcgcaaaaatccaggatgactctattagtagccctcggattgcagaagtggaagcaaaa
catgtcgatgagagtaaatctaatcatgatttggaacttgaagctgtcaaggaagctcaa
gttgtctgtgagaactcagagaaagatcaaaattcgttggagcaaactgttgaaatgatc
agtgagcgttcagtaacaactgataagtatagcgtggaagaatcacggtcaccatctgat
agactggtccctgaccatactggtgctgctggagaaaatgtttcaaacaaaaccgtagaa
aaacctggcataagtgactcctctgtgtctagggagcaatcatcttcatatacaaaggac
aaggtttttcatcctcaagcatctggtcagtcatcaccttctacaagcgcatttaactca
actgagtcttcacatgaacctgtcagcagtgcataccctcctattcaatcctcttcagaa
gttgccgatatgctgcaacagctaatagccatgcagaaggatatgcagaagcagctaggt
actatcgttattgctcccattgcgaaggaaggcaaaagaattgaaacatcactaggccgt
acaatggaaaaatctatcaaggctagcattgatgccttgtgggctcgtttcctggaggag
aacacaaaacgtgagaaggctgaaagggagcgaatgcagcaaatgaccactctcatcaca
agctcaataaacaaggaccttcctgctatgttggataagttagtaaagaaagaagtttct
tcacttggacctgttgttgcacgggcaatgacacctattattgagaagtccttaacttct
atagttgctgatgcagttcagaaagcggtgggtgacaaggtggtgaatcagctggacaaa
tctgttactgcaaaacttgaagctacacttgctaggcaaatccaaatgcaatttcataca
tctgtaaaacagactcttcaggatgttttacgcactagctttgaatcattgcttgttcca
gcatttgaacaatcatgcaagacaatgtttgagcaagtagacagtgcattccagaaagga
atgtctgagcatgctgttgctattcagcagcaggttgaggcagcacatactccattggtg
cttactttaaaggaaactatcacttctgcatcctcaatcacccagaatctcacatcagag
ttacttgatgggaatcgcaaaattttggcgctggttacatctggcaatgccaatgcgcaa
aatacaaatgttctgcagcccaacaatggtcctatcactggcccgccagaggtcgaggca
ccattagacccgatgaaggagctgggaagactgctagctgaacacaaatttgacgaggct
tttacagtagcacttcaaagaagtgacgtgtcaattgtgtcttggttatgctctcaggtt
gatttgcgtggattatgtacaatggccccagtccctctgaaccagggagtcctcctagcc
ctactccagcagctagcagttgatattggcaccgagacatcccggaaaattcagtggatg
acagatgttgccatggcgatcaatccgacagaccaagtcatcgccatacatgtgaggcct
atcttcgagcaagtctacgccaaattggctcaccaccggtcgctccccaccaccagtcca
ttggataacagcaatcttcgcttgcttatgcatgtcatcaactcagttctgcttagctac
aagtga
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