Triticum aestivum (bread wheat): 123128524
Help
Entry
123128524 CDS
T07757
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123128524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123128524
03019 Messenger RNA biogenesis [BR:
taes03019
]
123128524
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123128524
RNA polymerase I system
123128524
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
123128524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW2_Spt5
KOW4_SPT5
KOW6_SPT51-2
KOWx_SPT5
KOW7_SPT5
KOW
KOW5_SPT5
Spt5_N
GPKOW_C
DUF6897
Ribosomal_L19
Motif
Other DBs
NCBI-GeneID:
123128524
NCBI-ProteinID:
XP_044404487
LinkDB
All DBs
Position
6A:complement(561389048..561395991)
Genome browser
AA seq
1038 aa
AA seq
DB search
MSRRGREEEEEEEEFEEVEEEEEADESEVEEEQVEERGGKRSRGGGGKGSGVASFIDDAA
SEDDDEEEEDDDDDYEEGGGGRARGRRPSKRKRSILIDDMAQVDDDDGEEEEEDGYEEGF
IDDDARADNPDEDVKKGSRRHFNPNPMDDADDMENLEEMLKWKYRTQSHSDFDEEGLTEV
EQQALLPSVKDPKLWMVKCAIGHERETALCLMQKFIDRQDLQIKSVVALEHLKNYIYVEA
EKEAHVKEACKGLRNIFSSAKILLVPTKEMTDVLSVTSKSADLSRDTWVRLKLGIYKGDL
AKVVEVDDVRQKVTVKLIPRLDLQALTDKLKGLKVAKKKSFIPPRRLFSTDEAREMNIPV
ERRRDKDSGEYFEMVGALKFEDGFLHKKVSIKSISTQNVKPSLDELEKFGRVGDDVNEDV
AILSTLSRKKGHFMKGDAVVVVKGDLKDIRGCVEKVEDSIVHIRPTRSDLPKTLAFSEKD
LCKYFNPGDHVKVVFGVQEGVTGMVVKVEGHVLTILSDTSKEHIRVFADHVVESSEVTTG
LTRIGDYELHDLVLLDNLSFGVIVRVESEAFQVLKGVPDKPEVVLVKLREIKYKIDRRTS
AKDSKNNTVSTKDIVRVIEGPCKGKQGPVEHIHKGICFIHDRHHLEHSGFICAKAQSCVL
VGGSVVNSSRMGVDTADPRLGAFRSPARILQSPGGLPPRGPYMNSGGRFGGGGRGGRGHD
ALVSRCIKIKSGPYKGYRGRVKEVNGALVRVELDSLMKIVTVKREDIADTANVGTPFRES
RYSLGSETPMHPSRTPLYPIQTPMREPGATPICDGSQTPMHNQAWAPMSPPRDNQEDGNR
GTWGAWGISPAYQPGTPVTRPFDAPTPGSGWESTSRTGFGDAPFNAPTPSAQPMTPIPAS
YLPGTPGGQLMTPGNAGMDAMSPMIGDEGGSNWLLPDVCVNVSRGDGSTNGVVKEVLLDG
SCRVALGPSGSGDEVTALPDELEIIRPKKSDRVKIMNGSMRGVIGRLVGVDGSDGIVRVE
SPLDMKIVDLVILGKLAT
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccgcggccgcgaggaggaggaggaggaggaggagttcgaggaggtagaggag
gaggaggaggccgacgagtcggaggtggaggaggagcaggtggaggagaggggcggcaag
cggtcgcgcggcggcggggggaagggctcgggcgtcgcgagcttcatcgacgacgcggcc
agcgaggacgacgacgaggaggaagaggatgacgacgacgactacgaggagggcggcggc
ggtcgcgcccgcggccgccggcccagcaagaggaagcggtcgatcctgatcgacgacatg
gcgcaggtcgacgacgacgacggcgaggaggaggaggaggacggctacgaggaaggtttt
attgatgatgatgctcgggctgataatcctgacgaggatgtgaaaaagggttctagacgt
catttcaatccaaatccaatggatgatgcagacgatatggagaacttggaagagatgtta
aaatggaaatatagaacgcaatcacactctgattttgatgaagagggtctaaccgaggtt
gaacagcaagctctcctgccatcagtgaaggatccaaagctctggatggtgaaatgtgcg
attggacatgagcgagagacagccctttgtctaatgcaaaagttcattgataggcaagat
ctccagattaagtccgtcgttgcattggaacacctaaagaattacatttatgttgaagca
gagaaagaagcccatgtcaaggaggcttgcaaaggtctgcggaacatcttttcttcagca
aaaatacttctggttcctacaaaagaaatgactgatgttctctctgtcacgagtaagtct
gctgatctttcaagagatacatgggtcaggttgaagcttggtatatataaaggggatctt
gctaaggttgtcgaagttgatgatgtgcgccaaaaggttactgtgaagctcattcctaga
ttagatttacaagctttgacagataaattgaaaggtcttaaggttgcaaagaagaagtcg
tttattccaccgcgaaggttatttagtaccgacgaggcgagggagatgaacattcctgta
gaacggaggagagataaagattctggggaatactttgagatggttggcgctttaaaattt
gaagatggtttcttgcacaaaaaagtctcgataaaatcaatcagcacacagaatgttaag
ccatcacttgatgaattggagaaattcgggagagttggtgatgacgtgaatgaagatgtg
gctatattgtccacactcagcaggaagaagggacattttatgaaaggcgatgctgtagtt
gttgttaaaggtgatctcaaggacataaggggctgtgtggagaaagtagaggattctatt
gttcacatccgaccaacacgatctgatcttccgaaaacacttgccttcagtgagaaagat
ctctgcaaatatttcaatcccggggaccatgtaaaagtggtttttggtgttcaagaaggt
gtgacaggcatggtagttaaagtggaaggacatgtcttgaccattttatctgacacaagc
aaagaacatatccgtgtgtttgcagatcatgttgtggagagttctgaggtcacgacgggg
cttaccagaattggtgattatgaattgcatgatcttgtccttcttgacaatttatcattt
ggtgtgattgtaagggtggaaagcgaagcatttcaggttctcaaaggagtgcctgataaa
cctgaagtggtgcttgtgaaactgagagaaataaaatacaaaatcgatcggcgcacatct
gcaaaagatagcaagaataacacggtgtcaactaaggatattgtcagggtcattgagggg
ccatgcaagggaaagcaaggacctgtggaacatatacacaaagggatatgttttatacat
gaccgccaccaccttgaacattcaggctttatctgtgcaaaagcacaatcgtgtgtcctt
gttgggggatcggttgtcaacagcagcaggatgggtgttgatacagcagatccacggctt
ggtgcttttagatctccagcaaggatcttgcaatctcctggagggcttccgccgagagga
ccttacatgaattctggtggaaggtttggaggaggtggtcgtggtggcagagggcatgat
gccttggtgagtagatgcatcaaaattaaatctggtccctacaaaggatatcgtggccgt
gttaaagaagtgaatggtgcactcgtgcgtgtggagcttgattcacttatgaagattgtc
acagttaagagagaggatattgctgacacagcgaatgttgggacaccattccgtgaatct
cgttattcattgggcagtgaaacacctatgcacccatctcgaacgccattgtatcctatt
caaactccaatgcgagaacctggagcgacaccaatttgtgatggatcgcaaactcctatg
cataatcaagcctgggcaccaatgagtccaccgagggataaccaggaagatggaaatcgt
ggcacttggggcgcttgggggatcagtccagcttaccagccaggaactccagtaactagg
ccatttgatgcccccactcctggatcagggtgggaaagtacctctagaactggctttggt
gatgctccattcaacgctccaacacctagtgctcaaccaatgaccccaattcctgcctct
tatttgcctggaacccctggtggccagctaatgaccccagggaatgctggaatggacgca
atgtctccaatgataggggatgagggcggcagtaattggctcttgccagatgtttgcgtc
aatgtgtccagaggagatggttccaccaatggtgtggtgaaggaagtgctcctggatgga
tcttgccgtgtcgcacttgggccatcaggcagtggggatgaagtaacagctcttccagac
gagctcgagatcatcaggccgaagaagagcgacagggtcaagataatgaatggcagcatg
cgtggagttataggaagactggtaggagtcgacgggtctgatgggattgtccgggtggaa
agtccgcttgacatgaaaatagtagacctggtgattttgggtaaactagcaacgtga
DBGET
integrated database retrieval system
