Triticum aestivum (bread wheat): 123147364
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Entry
123147364 CDS
T07757
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123147364
09123 Folding, sorting and degradation
03018 RNA degradation
123147364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123147364
03041 Spliceosome [BR:
taes03041
]
123147364
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123147364
mRNA degradation factors
5'-3' decay
Lsm complex
123147364
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123147364
Complex C
U2 snRNP components
123147364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
DUF1256
DUF150_C
Motif
Other DBs
NCBI-GeneID:
123147364
NCBI-ProteinID:
XP_044422538
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Position
7A:complement(427083947..427089744)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDIDILHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcttctcctacttcaaggagctcgtcgggaaggaggttacggtcgagctcaag
aacgacctggccatccgcggcacgctccactcggtggatcagtacctcaacatcaagctc
gagaacactcgggtcgtcgaccaggacaagtatccccacatgctatcggtgcggaactgc
ttcatcaggggatctgtggtgcgttacgtcctgcttccgcaggacggggttgacatcgac
atcctccatgatgccaccaggagggaggcacggggcggctga
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