Triticum aestivum (bread wheat): 123153198
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Entry
123153198 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123153198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123153198
03041 Spliceosome [BR:
taes03041
]
123153198
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123153198
Spliceosome [BR:
taes03041
]
Complex B
Other components
Prp19-related factors
123153198
Complex C
123153198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
Mad3_BUB1_I
TPR_16
PPR
Suf
TPR_12
Motif
Other DBs
NCBI-GeneID:
123153198
NCBI-ProteinID:
XP_044428363
LinkDB
All DBs
Position
7A:complement(154206606..154209048)
Genome browser
AA seq
764 aa
AA seq
DB search
MEIEVSADDVLSGWLRYLSARRAAPPAKRAAIYERALRALPGSYKLWHAYLTELGDAARA
LPVTHAAHAGLDAAFERALAAGMSRMPRVWHMYASSLLHQRLLTRARRVLDRALRSLPVT
QHHRVWPLHLRLASLPDCPAPTALRVHGRHLQFNPDHAEQFIAFLVSAGRWRDAAHHLAA
AIDDEGFVFVKGTTKRQLLLDLCGLLAQHSEDVAGMPVDAILRGSFRKFPEEAGVLWTCL
ASHYARRGLHGKARDMFEEATTTATTVKDFRMVFDAYLHFEHAMAAAELELGQANTVNIQ
DCWLADRDSTDLAMARLERLLERRPELLNSVLLTQNPHDVQAWHERAKIFHKDPARHAAT
YVETIKTVDPAKATGKPPHTLWLALARMYEDRGSVDCARDVLHGATQANFTAAEHLAAVY
CEWANMELRHQDPERAIDLIRRATTPPSIEATARAAAAGGEDVRAKLHRCLKLWLVYLDL
MTTHGSLESTCAVYDRMHDLGVITPLLVLDHASLHEQHGRFEDAFRAYERGVRSFKHPHT
EAIWEAYLTKSVQRHGECRPERVRDLFQAAILQSPPERKKAVYLRYARFEEDFGLASRAM
KVYEEAAGAVPAGDRLGVYGVYVARATELYGLLKARDVYGQAIVGGGLPDEGARAMCVGF
ADIEIGLGEVARTRALYAYAAAFTDPGVCHDFWKRWNDFEVRHGDEGTFREMLRAKRTMA
AVARDGAGARCATGTGGGMVEQGLRRCAGQRLDGARQSKRIRLV
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgaggtctcggcggacgacgtcctgtccggctggctgcgctacctgtcggcc
cgccgcgcggcgccgccggcgaagcgcgcggccatctacgagcgggcgctgcgggccctc
cccggttcctacaagctctggcacgcctacctcacggagctcggcgacgccgcgcgcgcg
ctgcccgtcacccacgccgcccacgccggcctcgacgccgccttcgagcgcgcgctcgcc
gccggcatgtcccggatgccgcgcgtctggcacatgtacgcctcctcgctcctccaccag
cgcctcctcacccgcgcccgccgcgtgctcgaccgcgccctgcggtcgctgcccgtcacg
cagcaccaccgcgtgtggccgctccacctccgcctcgcctccctgcccgactgcccagcc
ccgaccgccctccgcgtgcatggccgccacctccagttcaaccccgaccacgccgagcag
ttcatcgccttcctcgtctctgccggcagatggcgggacgccgcccaccacctcgcggcg
gccatcgacgacgaaggcttcgtgttcgtcaagggcacaacgaagcgccagctcctgctt
gacctgtgtggcctgctcgcccagcactcggaggacgtcgccggtatgccggtggacgca
atcctccgcggcagcttccgcaagttccccgaggaggccggcgtgctgtggacatgtctg
gccagccactacgcgcggagaggcctccatggcaaggcgagggacatgttcgaggaggcc
acaaccaccgcgaccaccgtcaaggacttccggatggtgttcgacgcttacttgcacttc
gagcacgccatggccgccgcggagctcgagctcgggcaagcgaacaccgttaacatccag
gactgctggctcgcggacagggacagcacagacttggcgatggcgaggctggagcggctg
ctcgaacgccggccggagctgctcaacagcgtgctgctgacgcagaacccgcacgacgtc
caggcgtggcacgagcgggccaagatcttccacaaggatcccgcgaggcacgccgcgacc
tacgtggagaccatcaagaccgtcgatccggcgaaggcgacggggaagccgccgcacacg
ctctggctggcgctagccaggatgtacgaggaccgtggcagcgtcgactgcgcccgagac
gtcctccacggagccacgcaggcgaacttcacggcggcggagcacctcgccgcggtttac
tgcgagtgggccaatatggagctgaggcaccaggatcccgagcgggccatcgacctcatc
cggcgagcgaccacgccaccatcgatcgaggccacggctcgcgccgctgctgccggcggc
gaggacgttcgggcgaaactgcaccggtgtctcaagctgtggctcgtgtacctggacctg
atgacaacgcacgggtcgctcgagtccacctgcgccgtctacgacaggatgcacgacctc
ggcgtcatcacgccattgctggtgctggaccacgcgtccctgcacgagcagcacggccgg
ttcgaggacgcgttccgtgcgtacgagcggggcgtcaggtccttcaagcacccgcacacc
gaggccatatgggaggcgtacctgaccaagtccgtccagcggcacggggagtgcaggccg
gagagggtgcgggacctgttccaggcggccatcctgcagtcgccgccggagaggaagaag
gccgtgtacctcagatacgcgaggttcgaggaggacttcggcctcgcgagccgcgccatg
aaggtgtacgaggaggccgcgggcgccgtccccgccggcgacaggctcggggtctacggg
gtgtacgtcgcgcgggctaccgagctctacggccttctgaaggcgagggacgtgtacggc
caggcgatcgtcggcggcgggctgcccgacgagggcgcgagggcgatgtgcgtcgggttc
gccgacatcgagatcgggctcggggaagttgcgcgtactcgggcgctgtacgcctacgcg
gcggccttcacggatcccggggtttgccatgatttttggaagcggtggaacgactttgag
gtgcggcacggcgacgagggtacgttcagggagatgctccgcgcgaagaggaccatggcg
gccgttgccagagatggagccggggcgcggtgtgcgaccggcaccggcggcggcatggtg
gagcaggggctgcgccgttgcgcgggacaacgactcgacggtgctcggcaatccaagcgg
atacgcctagtgtag
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