KEGG   Triticum aestivum (bread wheat): 123156239
Entry
123156239         CDS       T07757                                 
Name
(RefSeq) THO complex subunit 4D-like isoform X1
  KO
K12881  THO complex subunit 4
Organism
taes  Triticum aestivum (bread wheat)
Pathway
taes03013  Nucleocytoplasmic transport
taes03015  mRNA surveillance pathway
taes03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:taes00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123156239
  09122 Translation
   03013 Nucleocytoplasmic transport
    123156239
   03015 mRNA surveillance pathway
    123156239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:taes03019]
    123156239
   03041 Spliceosome [BR:taes03041]
    123156239
Messenger RNA biogenesis [BR:taes03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     123156239
    TREX complex
     123156239
Spliceosome [BR:taes03041]
 Complex C
  Other components
   EJC/TREX
    123156239
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    123156239
SSDB
Motif
Pfam: RRM_1 FoP_duplication TrAA12 RRM_9
Other DBs
NCBI-GeneID: 123156239
NCBI-ProteinID: XP_044430321
LinkDB
Position
7B:complement(129848515..129852918)
AA seq 301 aa
MEAALNMSLDDMIKNRSGRGRGRGRGQRVGRGRGDGQRSGRGDGQRLGRGLGRGRGAGTF
RGRGVPSQRPLGVNTRSSSYAIAKSFNKTKDFAWTHDRFEDSMVAAGLPGIETGTKLYVS
NLHYGVTKEDLQELFSEMGHLKNCIVHYDNNRHPTGSAEVIFTRRSEAVQALKRYNNVRL
DGKEMKIEMIGANLGLAAAPAPRVNVVSGARGRGQREVVMSRPNGFGRGVTDSSSFLPGW
KRNNGFAQRGGSVRGRGRGRGRSSFGRGRGRGVYVRKGSVKSADQLDKELDTYHSGAMNV
D
NT seq 906 nt   +upstreamnt  +downstreamnt
atggaggcagctttgaatatgtcactcgatgatatgattaagaacagaagtgggagggga
agaggaaggggaaggggacaaagggttggtcgaggccgaggtgatggccaaaggtcaggc
agaggtgatggccaaaggctaggccgtggtttaggccgtggacgcggtgctggaaccttc
cgtggaaggggagtgccttcccaaaggccacttggtgtcaatactcgctcgtcatcgtat
gctattgccaagtcattcaacaaaacaaaggattttgcatggacacatgatcggtttgag
gatagcatggtggctgctggacttcctgggatagaaactggtaccaagttgtatgtgtca
aacttgcactacggagtgacaaaggaagatttacaggaacttttctctgaaatgggtcat
ttgaagaactgcattgttcattatgacaataatagacacccaactggttcagctgaggtg
atattcactaggaggagtgaagctgtccaagcattgaaacgatataataatgtacgcctt
gatgggaaagaaatgaagatcgaaatgattggagcaaatttgggtttggctgctgctcct
gcacctcgtgttaatgttgtttcaggcgcaagaggaagaggacagagagaagttgtgatg
tcccgtccaaatgggtttggtcgaggtgtgactgactcatctagttttcttcctgggtgg
aagcgcaacaacggttttgctcagagaggaggatcggtccgtgggcgtgggcgtgggcgt
ggccgtagcagctttggtcgaggtcgtggacgtggtgtctacgtacggaaggggtcggtg
aaatcagctgaccaattggacaaggagctggacacctatcattctggagcaatgaatgtc
gactaa

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