Triticum aestivum (bread wheat): 123162176
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Entry
123162176 CDS
T07757
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123162176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
taes03041
]
123162176
Spliceosome [BR:
taes03041
]
Complex B
Other components
Prp19-related factors
123162176
Complex C
123162176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_YTH1
RRM_3
zf-CCCH_10
RRM_occluded
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
123162176
NCBI-ProteinID:
XP_044435900
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All DBs
Position
7B:complement(34732082..34735714)
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AA seq
497 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRKAAAGIDYDSSYGKARPNDTILKLQRTSPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQPPDDETIRTLYIGGLDNRVS
EQDLRDQFYAHGEIESIRMVIQRACAFVTYTTREGAERAAEELANKLVIKGVRLKLMWGK
PQAPRPDDDEAGRQGHVSHGGLLPRAVISQQHSSDQPQPPGMEGQQQVAPPGTGYFNIPP
PPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHAGQAQASSSSGQGYPMRPPLPPYYQ
GAQYPPYYPPPPYGGGYMAPPRMPYPPQYPPYRPMLAPPAHQQHGSSSQQPAPPPAGQQQ
AQAPPAQQQPPAAAAQN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctgctgcgggacgcgcaggccgacggctgggagcggtccgacttcccc
atcatctgcgagtcgtgcctcggcgacaacccctacgtccgcatgctgagagcagaatat
gacaaggaatgcaagatctgtgcgcgtccttttactgtcttccgttggagacctggtcgg
gacgcaaggtacaagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgc
caggtctgccttctggaccttgaatatggtctgccagttcaggtccgcgatactgcactc
gcgatcaattcgaatgatgcaattccaaggagtgatgtcaaccgtgagtactttgcagaa
gagcatgatcgtaaggctgcagctggcatagattatgactcttcatatggaaaggcccgt
ccaaatgataccattctgaagcttcagaggacttcaccatattacaagaggaaccgagct
catgtttgcagtttctatgtgcggggtgaatgtacaagaggcgctgagtgcccatatcgc
cacgagatgcctgagacaggggagttatcccagcagaacatcaaagatcgctactatgga
gttaatgacccagtggctctcaagcttttgggtaaggcaggtgagatgccatctctgcaa
ccaccagatgatgagactataaggaccctctacattggtggacttgataaccgagtcagt
gagcaggatttgagggatcagttttatgcacatggtgagattgaatccatcaggatggta
atccagcgtgcttgtgcatttgtgacatacacaactagagaaggcgctgagcgtgctgca
gaggagcttgctaacaagctagtcatcaagggtgtgcgcctgaagctcatgtggggcaag
cctcaagccccaaggccagatgatgatgaggctgggaggcaaggccatgtatcccacgga
ggattgctccctagggctgtcatatcccagcagcatagcagcgaccagcctcagccacct
gggatggagggacaacagcaagtggcaccaccaggaacgggctacttcaacatcccacca
ccgccagcggtggatcagaggatgtacccttcaatggacccccagaggatgggcgctgta
gtcaggtcgcaggagggcgatggcagcaagccagggccacagcatgccgggcaagctcag
gcgtcaagcagctcaggacagggctatcctatgcgtccgccgctgccgccttactaccag
ggtgctcagtaccctccatactacccacccccaccatatggcggcggttacatggccccg
cctcgcatgccgtacccaccccagtatccgccataccggccaatgctggcacccccagcg
caccagcaacacgggagttcatcccagcagccggcaccaccgccggcagggcagcagcag
gctcaagcacctcctgctcagcagcagccaccggcggcggcagctcagaactga
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