Triticum aestivum (bread wheat): 123166711
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Entry
123166711 CDS
T07757
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123166711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123166711
03041 Spliceosome [BR:
taes03041
]
123166711
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123166711
Spliceosome [BR:
taes03041
]
Complex B
Other components
Prp19-related factors
123166711
Complex C
123166711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
Mad3_BUB1_I
TPR_16
Suf
PPR
ARM_TT21
MIT
Motif
Other DBs
NCBI-GeneID:
123166711
NCBI-ProteinID:
XP_044440441
LinkDB
All DBs
Position
7D:complement(152835607..152838099)
Genome browser
AA seq
775 aa
AA seq
DB search
MAAAMEIEVSADDVAYEEDVLPFSLSGWLRYLSARRAAPPAKRAAIYERALRALPGSYKL
WHAYLTELGDAARALPVTHAAHAGLNVAFERALAAGMSRMPRVWHMYASSLLHQRLLTRA
RRVLDRALRSLPVTQQHHVWPLHLRLASLPDCPAPTALRVHGRHLQFDPDHAEEFIAFLV
SAGRWRDAAQHLAAAIDDEGFVSVKGTTKRQLLLDLCGLLAQPPEEVARMPVDAILRGSI
RKFPEEAGVLWTCLASHYARRGLHGKARDVFEEATTTATTVKDFRMVFDAYLHFEHAMAA
AELELGQANTVNIQDCWLADRDSTDLAMARLERLLERRPELLNSVLLRQNPHDVQAWHER
AKIFRMDPARHAATYVETIMTVDPAKATGKPPHTLWLALARMYEDRGSVDCARDVLHGAT
QANFTAAEHLAAVYCEWAHMELRHQDPERAIDLIRRATTPPSIEATTRAAAAGGEDVRAK
LHRCLKLWLVYLDLMTTHGSLESTCAVYDKMHDLGVVTPLLVLDHATLLEQHGRFEDAFR
VYERGVRSFKHPHADAIWEAYLTKSVQRHGKSRPERVRDLFQAAVLQSPPERKKAVYLRY
ARFEEDFGLASRAMKVYEEAASAVPAGDRLGVYEVYVARAAELYGLLKARDVYRQAIVGG
GLPDEGARAMCVGFADLEIGIGEVARARALHVYAAAFTDPEVYPEFWKRWNDFEVQQGDE
GTFREMLRAKRTMAAVARDGARARRAIGAGGGVVERPCAGQRYDGAQQCKWIRLV
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccatggagatcgaggtctcggcggacgacgtcgcgtacgaggaggacgtc
ctgcccttcagcctgtccggctggctgcgctacctgtcggctcgccgcgcggcgccgccg
gcgaagcgcgcggccatctacgagcgggcgctgcgggccctccccggatcctacaagctc
tggcacgcctacctcacggagctcggcgacgccgcgcgcgcgctgcccgtcacccacgcc
gcccacgccggcctcaacgtcgccttcgagcgcgctctcgcggccggcatgtcccggatg
ccgcgcgtctggcacatgtacgcctcctcgctcctccaccagcgcctcctcacccgcgcc
cgccgcgtgctcgaccgcgctctgcgctcgctgcccgtcacgcagcagcaccacgtgtgg
ccactccacctccgcctcgcttccctccctgactgcccggccccgaccgctctccgcgtg
catggccgccacctccagttcgaccccgaccacgccgaggagttcatcgccttcctcgtc
tctgccggcagatggcgggacgccgcccaacacctcgccgcggccatcgacgacgaaggc
ttcgtgtccgtcaagggcacaacgaagcgccagctcctgcttgacctgtgtggcctgctc
gcccagcctccagaggaggtcgccaggatgccggtggacgccatcctccgcggcagcatc
cgcaagttccccgaggaagccggcgtgctatggacatgcctggccagccactacgcgcgg
agaggcctccacggcaaggcgagggacgtgttcgaggaggccacaaccacggcgaccacc
gtcaaggactttcggatggtgttcgacgcatacttgcacttcgagcacgccatggccgcc
gcggagctcgagctcgggcaagcgaacaccgttaacatccaggactgctggctcgcggac
agggacagcacagacttggcgatggcgaggctggagcggctgctggaacgccggccggag
ctgctcaacagcgtgctgctgaggcagaacccgcacgacgtccaggcgtggcacgagcgg
gccaagatcttccgcatggatcccgcgaggcacgccgcgacctacgtggagaccatcatg
accgtcgatccggcgaaggcgacggggaagccgccgcacacgctctggctggcgctagcc
aggatgtacgaggaccgtggcagcgtcgactgcgcccgagacgtcctccacggagccacg
caggcgaacttcacggcggcggagcacctcgccgcggtttactgcgagtgggcccacatg
gagctgaggcaccaggatcccgagcgggccatcgacctcatccggcgagcgaccacgcca
ccgtcgatcgaggccacgactcgcgccgctgctgccggcggcgaggacgttcgggcgaaa
ctgcaccggtgtctcaagctgtggctcgtgtacctggacctgatgacaacgcacgggtcg
ctcgagtccacctgcgccgtctacgacaagatgcacgacctcggcgtcgtcacgccattg
ctggtgctggaccacgcgaccctactcgagcagcacgggcggttcgaggacgcgttccgt
gtgtacgagcggggcgtcaggtccttcaagcacccgcacgccgacgccatatgggaggcg
tacctgaccaagtccgtccagcggcacgggaagagcaggccggagagggtgcgggacctg
ttccaggcggccgtcctgcagtcgccgccggagaggaagaaggccgtgtacctcagatac
gcgaggttcgaggaggacttcggcctcgcgagccgcgccatgaaggtgtacgaggaggcc
gcgagcgccgtccccgccggcgacaggctcggcgtctacgaggtgtacgtcgcgcgggct
gccgagctctacggccttctgaaggcgagggacgtgtaccgccaggcgatcgtcggcggc
gggctgcccgacgagggcgcgagggcgatgtgcgtcgggttcgccgacctcgagatcggg
atcggggaagtcgcgcgcgctcgggcgctgcacgtttacgcggcggccttcacagatccc
gaggtttaccctgagttttggaagcggtggaacgactttgaggtgcagcaaggcgacgag
ggtacgttcagggagatgctccgcgcgaagaggaccatggcggccgttgccagagatgga
gcaagggcgcggcgcgcgatcggcgccggcggcggcgtggtggagcgcccgtgcgccggg
caacgatacgacggtgctcagcaatgcaagtggatacgtctagtgtag
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