Triticum aestivum (bread wheat): 123167992
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Entry
123167992 CDS
T07757
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123167992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
taes03021
]
123167992
03019 Messenger RNA biogenesis [BR:
taes03019
]
123167992
Transcription machinery [BR:
taes03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123167992
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123167992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
123167992
NCBI-ProteinID:
XP_044441788
UniProt:
A0A3B6TK22
LinkDB
All DBs
Position
7D:341618165..341626924
Genome browser
AA seq
932 aa
AA seq
DB search
MASAAAAAPVVGQVVERFRARLREEAGEEPGAAAVVGVYKEALAELTFNCKPIITELTII
AGQHAALAARGIADAICARILEVPVEQKLPSLYLLDSIVKNIGQEYVEDFATRLQKVFCF
AYREVHPKQHPAMRHLFRTWSQVFPSSVLQGIEDELQFSPSENKRPATTTIPRQSESLSP
RPSHGIHVNPKYLEAQHQLKNGTKVDQLATRGRQMLDVAEDHINGLTTNSLRGFPSTSSK
LQRSMILYTENPDQQETFQSRIGLIRRDMSRSPPPDVLPRNASPKRPLEMPRLSHSALGH
DPRRLPGRNGWFERQRAFEDSAQRPSMSTLDEEYRKQSARELIDAYGNSQGNGADDRLPK
MQRLESNGMASRSSAQKWLTSEEEEYTWEDMRPTLSRNRNNIPSLPSSETLGAGFPGPNT
GQLDSDIGMRSWRSQAPRPALNLEDRTDHVDIATSRRYPGNFGLHNGAISEYHSSVNTLD
PGRILAMSAPPWQQTNGLPLRIQAPQPSSTLNRLALPTDVEMPVKMLATGGPYDAMHVDL
PLTNRSSPAPAPIEWPLHHSQPPHNTKDIRGATDSLEVRPFIRHGVNSSVFVPRHLYDAL
DRKTVSTGNLAQPPYQHPDLLSSSQQNQGTNFGNQSQPHDVPQFHPHSHSHPPEAFRSFA
PSMPIAPPQNPFQGQGGSAAVPPVTPLPNTFSVTPTVQPYGVSSVSSFALPPLHRGLPPA
SLQMGPSSSQVGGPTTYFSGILSNLMNHGVITLEPSSQPQDSVGVDFNVDLKVRNESVIN
ALYQDLHRQCKTCGLRFKCQEEHRAHMDWHVTKNRNSKNRKQSSRKYFVTVGEWLRAAET
VGNDGVPSFELTEPIPDRNEEKEMAVPADENQTTCALCQEPFEDFYSDETEEWMYKGAVY
MNAPDGNIVGLQRSHLGPIVHSKCRSGPSNIS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccgctgcggcggccccagtcgtgggccaggtcgtggagcggttccgcgcg
cggctgcgggaggaggcgggagaggagccgggggcggccgcggtggtgggcgtctacaag
gaggccctcgccgagctcaccttcaactgcaagcccatcatcaccgagcttaccatcatc
gcgggccagcacgccgcgctcgccgccaggggcatcgccgacgccatctgcgcccgcatc
cttgaggtgccagtcgagcagaaattgccatctttgtatctgctagatagtatcgtgaag
aacataggacaagaatatgtagaggactttgccactcgattgcagaaggtattttgtttt
gcatacagggaagttcatcccaaacagcatcctgcaatgcgacacctcttccgtacctgg
tcgcaagtgttcccttcttctgtccttcaagggatcgaggatgagcttcagttttctcct
tcagagaataagcgtcctgccacaacgactattccgcgacagtcagagtcgttatctcct
aggccatctcatggcatccatgtaaatccaaagtatctagaagcgcaacaccaactcaag
aacggtaccaaggtggatcagctagcaactcgaggcaggcaaatgcttgacgtggcggag
gatcatattaatgggttaacaacaaatagtttgcggggatttccttccacttcttcaaag
ctccagagatctatgatactgtatactgaaaatcctgatcaacaagaaacatttcaatca
cgtattggattgataagaagagatatgtccagatcaccacctcctgatgtgctccctagg
aatgcatccccaaaaagaccactagagatgccgcggctgtctcattctgcattggggcat
gatcctagaagattgcctggtaggaatggttggtttgaacggcaacgtgcttttgaggat
agtgcacaacggccttcgatgagcacgcttgatgaagaatataggaaacaaagtgcaaga
gaacttattgatgcctacggaaattctcaaggcaatggtgctgatgataggcttcccaag
atgcaacggctagaatcaaatggcatggcaagtagatccagtgcacaaaaatggctcact
tcagaggaagaggagtatacttgggaggatatgcgtccaactttgtcccgaaatagaaac
aacattccgtctttaccttcctctgaaaccttgggagctggatttcctgggccaaacact
gggcagctggattctgatattgggatgcgcagctggcgaagccaggctcctcgaccagca
ctaaatctcgaagacaggactgatcatgttgacatagccactagtaggagatatccaggc
aattttggtctgcacaatggagctatttcagagtaccatagttctgtgaatacccttgat
cctggaagaattcttgctatgtcagctccaccgtggcagcagactaatggcctgcctttg
cgaatacaagcacctcaaccttcatcaacactgaataggttggcactgcccactgatgtt
gaaatgcctgtcaagatgttggccactggtggtccatatgatgctatgcatgtagactta
cccttgactaataggtcctcgcctgctcctgctcccatagaatggcctcttcatcatagt
caaccaccacataatacaaaagatattagaggtgcaacagatagtcttgaagttaggcca
tttatcaggcatggagtcaattcatctgtatttgttcctcggcatctatatgatgcattg
gatcggaaaactgtaagtaccggtaacttagctcaaccaccataccagcacccagatttg
ttgtcatcgagtcaacagaatcaaggtacaaattttggaaatcaatctcagcctcatgat
gtgccacagtttcatcctcattcccattcccatcctccggaggcatttagaagctttgcc
cccagcatgcctatagctcccccccaaaatccattccaaggacaaggaggtagtgcagca
gtaccaccagttacacctctaccaaacaccttttctgtaacacctactgtgcaaccctat
ggtgtgtcgtcagtgtctagttttgctctgccaccattacatcgtggcctacctcctgct
tcgttgcagatgggtccatcttcatcacaagttggtgggcctacaacatatttctctgga
attttaagtaaccttatgaatcacggtgtaattacactggagccttctagtcaacctcag
gactctgttggagttgacttcaatgtagacctcaaggtgcgcaacgagtctgtcattaat
gctctgtatcaggatctccacaggcaatgcaaaacgtgtggccttcgttttaaatgccag
gaagagcaccgtgctcatatggattggcatgttacgaaaaacagaaattccaaaaatcgc
aagcaatcttcacgtaaatattttgtcaccgtgggggaatggttaagagcagcagaaaca
gtaggaaatgatggtgttccttctttcgagctcacggaaccaatccctgacagaaatgaa
gagaaagaaatggctgttcctgccgatgaaaaccaaacaacatgtgctttatgtcaagag
ccatttgaggatttctacagcgatgaaactgaagagtggatgtacaaaggtgcagtttac
atgaatgcacctgatggtaatattgttggtctccaaaggtcgcatttggggcctattgtc
cattccaaatgtcgatctggccccagtaatatttcttag
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