Triticum aestivum (bread wheat): 123169955
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Entry
123169955 CDS
T07757
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123169955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123169955
03041 Spliceosome [BR:
taes03041
]
123169955
03009 Ribosome biogenesis [BR:
taes03009
]
123169955
03016 Transfer RNA biogenesis [BR:
taes03016
]
123169955
Enzymes [BR:
taes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123169955
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123169955
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123169955
Complex C
U4/U6.U5 tri-SnRNP related factors
123169955
Ribosome biogenesis [BR:
taes03009
]
Eukaryotic type
Pre-60S particles
Helicases
123169955
Transfer RNA biogenesis [BR:
taes03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123169955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
HHH_8
Motif
Other DBs
NCBI-GeneID:
123169955
NCBI-ProteinID:
XP_044443741
UniProt:
A0A3B6TGG7
LinkDB
All DBs
Position
7D:5350812..5357814
Genome browser
AA seq
988 aa
AA seq
DB search
MEATLKRKAAEAPADGPDPPLKAPRADAAERVACLHDVSYPEGYDASASGPRVVAGGGEG
AAPAKTFPFPLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVMREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYT
DYRPTPLQHYVFPAGGDGLYLVVDENGKFREDSFQKSLNVLAPATGSDKKRENGKRQKGL
VSAGKTNEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDDEKVNIET
IFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT
ETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQRGICILMVDEK
MEPSTAKMMLKGGADSLNSAFHLSYNMLLNQLRSEDGDPEKLLRHSFYQFQADRALPDLE
KQVRELEIERSSMVIEDEESVKDYYDLLQQYRTLKKDVRDIVLSPKYVLPFLQSGRLVRV
QYSTDESTFSIDENVSWGIIINFEKVKTNAEERRPEDCDYTVDVLTRCSVIKDISGKKTM
KVIPLKSRGEPVVISLPLSQIDGLSSVRMYIPKDLLPVEARENTLRKVDEVLSRFAKDGV
PLLDPEEDMEVKSSSYRKAARRIEALESLFEKHDIRNAPHIQQKLKLLHAKQEIKAKIKS
IKKTMRASTALAFKDELKARKRVLRRLGYITSEDVVEIKGKVACEISSADELTLTELMFS
GTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVANLQLECKIQID
VESFVNSFRPDVMEAVYSWARGSKFHQIMEMTQVFEGSLIRAIRRLEEVLQQLILASQSI
GETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggaggccaccctcaagcgcaaggccgcggaagcccccgccgacgggcccgaccccccg
ctcaaggcgccgcgcgcggacgccgccgagcgcgtcgcctgcctgcacgacgtctcctac
cccgagggctacgacgcgtccgcctccggcccgcgcgtcgtcgccggcggcggcgagggc
gccgccccggccaagacgttccccttcccgctcgaccccttccagtccgaggccatccgc
tgcctcgacaacggcgagtccgtcatggtttcggcgcacacgtcggcggggaagacggtg
gtggcgctgtacgcgatagccatgtccctgcgcaaccagcagcgggtcatctacacgtcg
cccatcaaggccctcagcaaccagaagtacagggagttcaaggaggagttctccgacgtc
ggcctcatgaccggggacgtcaccatcgagccaaacgcatcttgcttggtcatgaccacg
gagatttggcgcagcatgcagtacaaggggtccgaggtgatgagggaagtcgcctgggtt
atcttcgatgaggtgcattacatgcgtgacagggagaggggagtggtgtgggaggagagt
attgtgatggcccccaaaaactcgcggttcgtgttcctctcggcaactgtacctaatgcc
aaggaatttgctgattgggttgccaaggtacataagcaaccttgtcatatagtatacacc
gactaccgacctacacctctccagcactatgtatttcctgctggaggtgatggcttatac
ctggtcgttgatgaaaatggcaagttcagagaggacagctttcagaaatctctgaatgtc
cttgcccctgctactggcagtgacaagaagagggaaaacgggaagcggcaaaagggcctt
gtctcggcaggcaaaactaatgaagaaagcgacatattcaagatggtgaaaatgataatt
cagcgtcaatatgaccctgtaatacttttcagctttagcaaaagggagtgtgaatttctt
gccatgcagatggccaagatggacttgaatggggatgatgagaaagtgaacattgaaacc
attttttggagtgccatggatttgctttcagatgatgataaaaagcttccccaggtttca
aatatgcttcctttattgaaacgtggcattggagtacatcattctggcctgctgcccatt
ttaaaggaagtgattgagatacttttccaagagggcctcatcaagtgtctgtttgccaca
gagacattcagtattggattgaacatgcctgcaaagactgttgtgtttaccaatgtacgt
aagtttgacggagatcgattcagatggttatcaagtggagagtacatccagatgagcggc
cgtgctggtcgtcgaggtattgatcagcgtggtatctgcatattgatggtagatgagaaa
atggaaccctcaactgccaaaatgatgctgaaaggaggtgctgatagtttgaacagtgcc
tttcatttgagctacaacatgttgttgaatcaactgcgctctgaggatggtgatccagaa
aagcttcttcggcattcattctaccaatttcaagcagatagagctctccctgatctcgag
aagcaagtcagggaactggaaatagaaagaagttccatggttattgaagacgaggagagc
gtgaaggactactatgatctcttacagcagtacagaactttaaagaaggatgtccgtgat
attgtactttcgccaaaatatgttctgcctttcttgcaatctggaaggcttgttcgtgtt
caatacagtacagatgagtccaccttctccattgacgaaaatgtgtcgtggggaattata
ataaattttgaaaaggtgaaaaccaatgctgaagaaagaaggcccgaggattgtgattac
actgttgatgtcctcacaagatgttctgtaatcaaggacataagtggaaagaagacaatg
aaggttattcctctcaaatcccgtggagaaccagttgttatttcgttgccactttctcag
attgatggactaagtagcgttcggatgtacatacccaaggatcttttgcctgtagaagct
cgagaaaacacattgaggaaagttgacgaagtgctttcaaggtttgctaaagatggggtt
cctctcttggatccagaagaagatatggaagtaaaatctagctcctaccggaaagctgcc
agaagaatagaagctcttgagagcttatttgagaagcatgacatccgtaatgctccccat
atccaacagaagctgaagctcttgcatgctaagcaagaaataaaagccaaaataaagtcc
ataaagaaaacaatgcgggcctcgactgctctagcctttaaggacgagctcaaggcacga
aaacgagttcttcgtaggctgggatatatcaccagtgaggatgtagttgaaataaagggc
aaagtggcatgtgagatcagctcagccgacgaactgacattgaccgagcttatgttcagt
ggcactttgaaagatgctactgtggagcagatggtggctctgctctcttgctttgtctgg
caggagaagcttcaggatgccccaaagccaagggaggagctcgacctgctcttctaccag
ttgcaagagacggcacgacgggtcgcgaacctccagcttgaatgcaagatccagatcgat
gttgagagttttgtgaactccttccgccccgacgtgatggaggccgtgtactcgtgggcc
agagggtccaagttccaccagatcatggagatgacacaggtgttcgagggcagcctgatc
agggccatcaggcggctggaggaggtcctgcagcagctgatcctggcatcccagtcgatc
ggtgagacccagctcgaagccaagctcgaggaggcggtcagcaagattaagagggacatc
gtgttcgccgcgtccctgtacttgtga
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