Triticum aestivum (bread wheat): 123183428
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Entry
123183428 CDS
T07757
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
taes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123183428
09123 Folding, sorting and degradation
03018 RNA degradation
123183428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123183428
03041 Spliceosome [BR:
taes03041
]
123183428
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123183428
mRNA degradation factors
5'-3' decay
Lsm complex
123183428
Spliceosome [BR:
taes03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123183428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7130
Motif
Other DBs
NCBI-GeneID:
123183428
NCBI-ProteinID:
XP_044452174
LinkDB
All DBs
Position
1D:496886991..496889139
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AA seq
99 aa
AA seq
DB search
MASVGPTLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtggggccgacgctcgagtccctcgtcgaccaggtgatctccgtcatcacc
aacgacggccgcaacatcgtggggactcttcgggggttcgaccaggccaccaacatcatc
ctcgacgagtcccacgagagggtctactccactaaggagggagtacagcagcttgtcctc
ggactgtacatcatcaggggcgacaacataggcgtggtgggtgaggtggacgaggagctg
gacgcggcgctggacatgtccaagctgagagcgcagcccctcaagccggtcatccactga
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