KEGG   Triticum aestivum (bread wheat): 123183428
Entry
123183428         CDS       T07757                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
taes  Triticum aestivum (bread wheat)
Pathway
taes03018  RNA degradation
taes03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:taes00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123183428
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123183428
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:taes03019]
    123183428
   03041 Spliceosome [BR:taes03041]
    123183428
Messenger RNA biogenesis [BR:taes03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123183428
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123183428
Spliceosome [BR:taes03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123183428
SSDB
Motif
Pfam: LSM DUF7130
Other DBs
NCBI-GeneID: 123183428
NCBI-ProteinID: XP_044452174
LinkDB
Position
1D:496886991..496889139
AA seq 99 aa
MASVGPTLESLVDQVISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcgtccgtggggccgacgctcgagtccctcgtcgaccaggtgatctccgtcatcacc
aacgacggccgcaacatcgtggggactcttcgggggttcgaccaggccaccaacatcatc
ctcgacgagtcccacgagagggtctactccactaaggagggagtacagcagcttgtcctc
ggactgtacatcatcaggggcgacaacataggcgtggtgggtgaggtggacgaggagctg
gacgcggcgctggacatgtccaagctgagagcgcagcccctcaagccggtcatccactga

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